K32440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32440

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32440

Determination of introduced cDNA(s)

J033037L18 - Rice Full-length cDNAs - Original: J033037L18

full reading [+] show sequence

GATTATTGGT GTGTCTATGG GTTTACCAGG TTCCCATTGA TAGTGTGCAA 
ACCACGGCGC ACACTCTGGC CGGTCGTCAG TTCAACCACC CGCCAACTGT 
TCGATCAAAT GCCTCCAGGG CGTCTACTTT GCCATTGCAA TTCCCATCTG 
CGAGAAAAGC TTCGGCGAGC AAACACAGGT CTTGCATTTG AAAATATCTG 
AACTGAGAGA TCGAGCACTG AATGGCAGAG TCTGTGGTGT TTGGAATCCT 
ATGCAAAATT GGATCAATAT TGGGGTCACA TCTGACGCAG GCATTAGTTT 
CACATCTGGG GAAGGAGGTA TCAGTTTTAA TTGAGGTTGA AAGCATTGTA 
AAGCAAATTA GAAGTGAGTT TAGGTTGATG CAATCTTTCC TGCAAGATGG 
CCAAGAAAAA GAAAGCTCCA GCAGGCAGGC TGAAACCTTT CTGCAGGAAG 
TTCAGCAGAT AGCATTTGAA GTTGAAGACA TCCTGGATGA ATTTGTCTAT 
TATTTTGGCA GAAAAGAAAC CCCATCTGTG GAATTGTTGA AGAACTTCTT 
CAGAAAATCT GAAAGTGTGA TGCCATTGCG CAGAATAGCA GCAGAACTCA 
AAGAAGTGCA GAATCGTCTC CAAAATATTC GAAACTTGAA ACTTCAGTAC 
AATATTGACT TATCTGAAGA AAGTGCCAGC TCCATCAGGT ATGAAGATAG 
CAAAGGTCAC ACACTCCACC ACATAATGCA TAATAAGAAA CTTGTCGGTT 
TTGTAAATGA GCGACAGAAG CTGCAAGAGT TGCTAATGGC AAATGAAAGA 
TCATGCTCAA TAATTTCCAT ATGGGGTATG GGAGGTTCCG GTAAAACTAC 
TCTTGTCAAA ACTGTTTCCG AAAGCAAAGC TAGCAAGAAC CGTTTTGATT 
GCCAGATCTG GGTTACCGTG TCTCAAACAT ATGACATTAC TGAAATAATG 
AGGAAGATTA TACAGTGTGC ATTGAAGGAT ACATGCTCAG CTGACTTAGG 
AAGCATGAGT AGTGAAGGCG TAGTGCTGAT GCTCCAGGAG ACTTTGCAGG 
GAAGGACATA CATGATGGTC TTGGATGATG TGTGGGATAC AAATGTTTGG 
TTCAGCTTGG AAGGCTTTCT AGATGAAAGC AGCATCAGAA GTAAGGTGGT 
AATTACTACT CGCATAAATG ATGTTGCTTC TTTGGCAGAA GACAAGCGCC 
GTCTTCAACT ACGAGGATTA GATGAGGCAG AGTCTTGGGA CCTCTTTTGC 
ATGTGGGCTT TCCGGCACGG TGAAGATCAA ACATGTCCTC CTGCAATGGA 
CCGAGTAGCA AGACAGATTG TTGGCAGGTG TGAAGGTCTA CCGTTGGCTA 
TAACGGCAGT AGGCAACTTG CTATCCTTCA AACGGCTGGA TTTGGTGGAG 
TGGGAGAAAT TCTATAATCA ACTGAACTGG GAGTTGCACA ATCGCTTGGA 
TAACCAAGGA CTCAGCATGG TGACTCGACT CCTTGGTTTA AGCTACAAGC 
ATCTACCGGT CCACTTGAAG AACTGTTTCC TTTTATGCAG TATCTTCCCA 
GAGGACTATA TGATACGCGG GAAGCGGCTA TGTAAACTAT TAGTAGTAGA 
AGGTCTTGTT GAACCAAGAA AAAACATGAC ACTGGAGGAG ATTGCAATGG 
AGTACATAGA AAAGCTAGTA GATCGCTGCC TGCTTCAAGT TGCTCGGAGA 
AATAAGCTTG GAAGAGTATG GGAACTCCAG ATGCATGACA TTATCAGGGA 
GCTGGCAATT TCAATATCCG AAAAGGAAGG ATTCTGCATG ATACATAATA 
AAGCTCAGAG ATCGGTGGTT GAGTGCGAGC CTCGTCGGTT ATCAATTCAT 
GAGAATTCAG TCAGAGTCCA GCTAAGTATA AATGCTTCAC GTGTTCGTTC 
TTTCTATCAA TTTGATATCG ATTGTTCCTC CGTGTCAAAA GTGCAATGGG 
TATAAGGACT GCTAGGTACC TGAAGGTTCT GGAACTAGGT AGTGTTCCAA 
TCAGAAAACT GCCGAGAGAC ATTGGGAACT TGTTCAATTT ACATTATTTA 
GGATTAAGAC GAACCAAGAT CAAGCAACTT CCTGAATCGA TTGACAGGCT 
CCAAAATCTC CGAACTTTGG ACATCTTCCT TACTGAAATA GCAAGTCTTC 
CACGTGGCGT AACCAGGCTA AGGATGCTAC GCCATCTGAT TGCTGGAAAG 
GCTGTTGCTT CTTATTTTGG CCTCGAAGAT GTCTTCACAG GTGTCAAAGT 
CCCCAATGGA TTATGGCGAT CACTGGATCT AAATGTCCTC ACAGGCATTT 
CTGCAAGCAG CAATTTGGTG GAACAATTGG CCAGCTTTAC ACAGCTGAGA 
TCATTGAAGT TGACAGACGT AAAAAATATC CACTATACAA AGCTATTTGC 
ATCCATCAGA AAGATGCAGC TTCTAAAGAA CCTTCTTATT GGAACTGCCA 
ATAGTGATGA GTATGTCAGC TTAGAAGCCC TAGATCCTGC ACCTCAGAAC 
CTTGAAATAC TCTTTGTGAA AGGTAGACTC CATGATAGGG TTATAGGCTC 
TGACCTATTT GAGGCAAATA GGCTAACCCT CATGGAGTTG ACTCTTGAAA 
ATAGCAGGCT GAGCATAGAT CCACTTCCAT CACTATCTAA TTTCTGTAAC 
CTGACCCTTC TTGGTCTGTT CAACCATTAT ATTGGAGAAA CCTTGCTCTT 
TCAGGCAGAG TGGTTTCCTA AGCTTCATAC ACTTACTTTG GCTGAGCTGC 
AAAATGTCAG TTCAATAGTG ATTGAAAAGC ATAGCATGCC AAATCTCTAT 
AACTTTGCTC TCATCTGCTT GACAAATTTA GAGGATTTGC CTGAGGGCAT 
GGAATTCCTT GGGTCTGTTG AAGAGCTCAG TTTGGTGGGC ATGCACCAAA 
AATTCATGGA ACATGTACAA GGTTCCTCAA ATGTAAAAGT CAAACACATT 
CCTGTAGTTG ACTACTTTGA TCAAACCAAA GGGAGGTGGG ATCGACTTTC 
TCCACTTTAT TTCGAAGACG AAGGCACTAA GAATTGAAAT TAAACACAAG 
CAAAGAAAAG ATGGATTACC TGCACTCCGA GCTTATCCTA TTCCCCACTC 
ATTTCTACTA GAGATCTTTC TACTATGTTC TCTCTATTGG CATCCAAAAA 
TATTTCTATG TATTTTGCCA CTCTTACATT AGTATCCTTT TGCCATCTCC 
ATTCGGTTGA TGATTGTTGA CTTCCATTGT TGGGCCCCAT CGTTTCGCTT 
TTTTTTCTAG TAAGCCAAAA CGGCTTATTA AAAAATAAAA ATGAATTTAT 
AGGT

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 5e-65; Score: 246.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Disease resistance protein	0.0000000000000055
FPrintScan	Disease resistance protein	0.0000000000000055
FPrintScan	Disease resistance protein	0.0000000000000055
Coil	coiled-coil	0
superfamily	L domain-like	2.1e-26
superfamily	P-loop containing nucleoside triphosphate hyd	1.2e-16
HMMPfam	NB-ARC	7.8e-74
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1, LRR	0.000000067
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.000000067
Gene3D	no description	0.00000013

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR