K32442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32442

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32442

Determination of introduced cDNA(s)

  • J023127H01 - Rice Full-length cDNAs - Original: J023127H01

    full reading [+] show sequence

    Nucleotide sequence: J023127H01 - full reading 
    GTGGGAGCAG CATCGAAATC GAATCGATCC ATCTGCACAA GGAAGGAAGC 
    ATCGAATCGA ACGACAAATC GAATCAATCC ATCGGCGGCG GCGGCGACTC 
    GGCTCTCGCT TCCACGCATC CATCCCCGCG CCCCCCTCCT CTCCGGCGAC 
    TCCCCGGAAT CGCGGCGCGG CGGCGCGGCC GCCCTAGCGT CGGCGACGGC 
    TAGGTCTTCC TCCCCGACCC CTTCGTGAGG TGAGGAATTC CTATATAGGA 
    CTACAATTTA AGGGAGAAGC TTTCAGGCTT CTAGCAAGTA ATAACTACTG 
    ATCTCCAATG GCACAACCTT CTTCTAAGAA GACGCCGTCA GTCTATCTTT 
    ACATCCCTAA TATCATTGGA TATTTTAGGA TCATCATAAA CTTCATTGCT 
    TTTGCCGTAT GTTATTCCAA TAGGGTGCTC TTTGCTATCC TATACTTCTT 
    CAGCTTTTTC TGCGATGGCT TGGATGGTTG GTTTGCACGA AAGTTTAACC 
    AAGCATCAAC ATTTGGAGCT GTGCTGGACA TGGTAACAGA TAGGGTTAGC 
    ACTGCCTGTT TGTTGGCACT TCTCTCCCAG TTTTACAGAC CTGGCTTAGT 
    TTTCTTGATG TTGCTTGGGT TGGATATTAC AAGCCATTGG TTTCAAATGT 
    ACAGTTCGTT CCTATCAGGT AAGACTAGCC ACAAGGATGT AAAAGACACA 
    GGCAATTGGC TTCTGAAGTT ATATTATGGA CACCGACCAT TCATGGCCTT 
    CTGTTGTGTT GCTTCGGAGG TTCTGTACAT AGTTCTTTTT CTGTTCGCCG 
    ATGAGAAGTC AACAAGCTTG CTTAATGTGT GCGGAAACCT TCTGAAGCAA 
    AGTCCTCTCA CTGTCTTTGT TTTCATTTCA ACTCTAGTTG GTTGGGCGTT 
    GAAACAAGTG ATCAATGTTA TCCAGATGAA ATCAGCCGCA GACGCGTGCG 
    TTGTGTTTGA TTTGAAGCGC GGCAAGTGAG CAGAAATGCA CAACGATTTC 
    GTTTAGCTTG TGTTTGGCAT GTCGAAGAAA ATATTCCATG AGGCTTGATG 
    TACCAAGGCT GTACAAACCT AATGTAAGAT TTTGACATGT CCTTGACACT 
    GAGGGAGGGC ATGCTGTGCA TTAACAGCAT GAAAAGAAAA GGAGAGAGAT 
    CAGATGTATT TGAGGAAAAC AGGGTTTTAG TCAGATTTTG TATGTTTCTT 
    TTTACAACAG CGATGAATCA GCGCGATCTT TGTTTCTTTA TGAGCTTGAT 
    GTTTGTTGAC AGTATTTTTA GCTGGTTATT TGTGAATACC ATTCTCACCT 
    CTGGAAATTT GGAGGGCATG AATCC

    Gene models with high sequence identity

    1. AT4G38570.1 [+] show detail - probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
      E-value: 4e-72; Score: 269.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote 1.4e-130
    HMMPanther PHOSPHATIDYLINOSITOL SYNTHASE 4.6e-92
    PatternScan CDP-alcohol phosphatidyltransferase 0
    HMMPfam CDP-alcohol phosphatidyltransferase 2.4e-19

    See the detailed result >

    AT4G38570.1

    Model type
    Protein coding
    Short Description
    probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
    Computational Description
    probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (PIS2); FUNCTIONS IN: phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phosphatidylinositol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: phosphatidylinositol synthase 1 (TAIR:AT1G68000.1); Has 2530 Blast hits to 2530 proteins in 950 species: Archae - 14; Bacteria - 1497; Metazoa - 167; Fungi - 185; Plants - 77; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR