K32451

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32451

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32451

Determination of introduced cDNA(s)

  • J033117C04 - Rice Full-length cDNAs - Original: J033117C04

    full reading [+] show sequence

    Nucleotide sequence: J033117C04 - full reading
    CAACTTTGGC ACTAATGTTC CTTACGTGCT AGTGTGTGTG TATATATATA 
    TATATATATA TATTTGAAAG GAGTAAGTTT TTTCAGTCTA TTTATGAATG
    AATTTTTGAA AAGGACCGAA ATGTAAAAAT CCAGCCAAAA TCATTGTGCG
    GCCCTGGTGC TCGGCGTCGA CTCCCGTCTC GTCTCCTCGC GAGCTCGCCC
    ACCCGCCGCC CTGCGCCGAT CTCCATCGAT TCCGCGACTT CGCGAGCAGT
    GGCGCCGTCG TCCGTCCTGC TGCTTCCGCC GCATCCTGGT TTGGGGGTTC
    AACTGAACCC CCTATGTCCC TCGTTAGATC CGCCCCTGCC CGGCAATGGG
    CAGCATGGAC ACGCCAAGAG GAACAAAATT TTTTCAATGC GCTGCGCCAA
    GTAGGGAAGA ATTTTGAGAA GATTACGCTG CGTGTCCAGA GCAAAAGCAA
    AGATCAGGTC AGACATTATT ACTATCGTCT TGTTCGACGC ATGAAGAAAC
    TTCTCGGTCC TGAGTTCTCG CTCGATGCAA AAAATTCCAA GGACACCATT
    GCTGCTATGC TCTGCTGGTG GTCTCTGCTT GAAAAATTTA GCTGCAGTGC
    ATCAAAACTG CATCTGAAGC CTCGGAGATT CAAAACTTTC GTAGAAGCAT
    TGGGAAATCA ACTACTAAAG GATAGAAATA AAACCAGAAA AAAGTGTCCA
    CGTGGGGATG TGTGCCTGTC CTCTTCATCT TCGGCTGTCA ACAGGACTCC
    TGGAAATGAA TCTTTCTCAG TAAAACTCTT GGCTGTGGAT GTCTCCAATG
    GTAGCAAAGT AGGATCTTCT AAAGGGTCAT TTTTCAAAAA GGTCACAGAA
    CCAAATTGCA GTAACAAGTC AGGTGCAACT AAAGGGGACC TCTCCGCCAC
    AAGAACTGTG AAACAGAAAA GAAGAGTAGG TGGTGTTGTT GCATCTGCTG
    CATATAAAAA ATGGGAGAGA GCTGCCATGG CTGGTGTTTC TTTGGTTGCT
    GATGCAGCTG AAGAGCTTGA GCGCAACACA GTGAACGCTG ATGCAAGAAT
    GTTATCTCCA TCATCAAGCA ATGCCTGCAC AGTTGATGGT CTTGGCACAA
    ATCATATAAA GGAAGCAGAT CAACAAGCAC CTGCAAAGCT AAAGTTGCAG
    CTATTTCCAA TAAATGAAGC TACACGAAAG GCATTAGAGA AGGATGAACA
    TAATCCACAT CTGGAACTCA CATTAAGTGC TAGGAAAAAA ATATCATCAG
    TACTAGAACA TTTGAACCGC AAGTGGGGCA ACTCAAACAT TGCATCTGGA
    GAGCTTTTGC TTTTTCCATA TTGTGCTCAT CAAGAAGATT TAGCTACATA
    TCAGAGGTGG ACCACAAAAG ATACTGTCGC AGTGGCTGAC GTTTTCCTTT
    CTGTGAATAG CCCATCTGTT TTTCGATTAA GGTATGGTTG GTTTTCCCTT
    GCTGAGCTTG AAGCAGGCGT AAGTGAAATA TCTTTGACTC ATTTTGAGAA
    TTGCTTGATA CCTGAAGACA TCCATGCCAA ATCTCCCTTA GAGGCTTGTG
    TGCAAAAGGA TGGTAATTCG CTGAGTAGTT GTGCTCCTGA GCAACACCCT
    TGTGGTTCGA AAGATCAGTC AGCATTATTG TTTGCTATGC CATCTAGTAC
    AGGCAAGAGT GCTCAGGTGC CAGAGCAGTG CATTGATGTT CTCCCCTCAC
    AGTTTGGCAG GCAGAATCAA GACCAAGTTA CCACGAACCA AGTTTTTGAG
    GTTGATCAAG GGATGGATTG TGCTGCAGTA TCTGAAGGAG AGTGGGCAGA
    TACCCTTACT GATATCAGTG TTGGATACTT ACTGACAGAA GCTTCCAGAG
    GTGCTAATAC TGATTGTCCA GGGACATCTG TTGTCAAAAA CACACTGTTG
    CTTGAGAATC CCTGCAGCTA TGATTCATTT GATGCTGCTG TTGCTCTTCA
    TGCTTCTCGT TATAAATCAG CAGAGCAGCC AGCCCTTGCA TCCCATTCAA
    CCATCTGGGG TGCTGAAGAA ACCTGTGACG CATTCAGTTT TAACCTACCA
    GCATCTAGGA AGCGAGAAGG TTCAAATAAT TCAGCTAGCA GCTCTCCCGA
    TAGTGACAGT GATGTTCATC CTTCAAACTC AGAAGGGTTT CAATGTTTTC
    TTCAGGACTT AGCTGGAGCG GCGGTTGCTC ATAATCCTTG TATTGACGAT
    GCCAAAGATG TAGAGTCACT TTGTGCTGAA TCGCCACCTC GAAGTGACCA
    CGATTCTGCT CCGAAGGATC AATCTCTAGC TGACTTATAC TGGCCTGATT
    CACTTGGACC ATTGGACTTG GACATACCGT CCGCGACATA CCATGCTGAT
    GACTTACTCC TAGGGGACAG CCAGAATAGT TGGAACCGCA TGATGGCGAA
    TAGCCTGGAT GCATTTCGAA ACCTGTCGTT CTTCACGGCA GATAAGAATG
    ACTCGATACC ATCCATCATG TAGAGCTCTG AATACTGGTG CTTCCTTCAT
    GCGCTTGCGT GGTGAAATTG CTACGTTGGC TACGAAGGTT TACCGCCAAC
    GATGCTGTGC ATCTCGCTGA AGAGGCTTTA TATTGTCCAA GTGAGCTGTT
    TGTGGCTAGA TCCAACAGCT GCGGACTTGC TGTGCGTTTG CAGTCAAGAG
    GGACGCATGT TGTTGTAAAG TAGTAACATA AGAGCTGTTC GTGCTAACAT
    GTATGTCGTG TAAATTGTGG TGTTCCTGTA AAAAAAAAAA GCTCACACAA
    TCGCTTGGTT ACAATAAAGC TTCTCCTGCC GTGTACCAGA TC

    Gene models with high sequence identity

    1. AT2G36960.3 [+] show detail - TSL-kinase interacting protein 1
      E-value: 1e-135; Score: 481.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.1e-08
    ProfileScan SANT, eukarya 13.155
    HMMPfam Myb, DNA-binding 4.5e-06
    HMMSmart SANT, DNA-binding 5.2e-07

    See the detailed result >

    AT2G36960.3

    Model type
    Protein coding
    Short Description
    TSL-kinase interacting protein 1
    Curator Summary
    Arabidopsis thaliana myb/SANT domain protein
    Computational Description
    TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1).
    Link
    InterPro Scan - TAIR