K32510

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32510

Determination of introduced cDNA(s)

  • J013043N06 - Rice Full-length cDNAs - Original: J013043N06

    full reading [+] show sequence

    Nucleotide sequence: J013043N06 - full reading
    GTCAATGTAA CCACAGCTAT CGTCTGCCCT AGAGAGAGTT GAGACCACGC 
    TGCCTAGTAG GTTGACTCCG CCGCCTCGAC CAGCAACGCT GCCGCCATTT
    GCACACGCTA GCTCGACCTC TTGCTCTGTT GTCGTCGTTC TCGCTTCCGA
    TGGCGGCTGC AGGCGGCGGA TCGTTGCTGG ATCAGTCGAG GCACGCCATG
    CACAGCTGGG TACTCAAGAA TATAGAGAAA TTGGCAGGAC ATTATGGTGC
    AGAGTTCAAC TCTTTGCGGG CATTTGAGGA CAGGGTATTC AATGAGACCA
    GCAGCATTGA TGATTATATT TCTAAAATAT CAACGAAGAT GGCTATTTTG
    GAGCGACCGC AGTCTTCTTC AGGTATGCAG CATCAAGGGC AGATGGGAAA
    TCAAACGAGG CTGCCTACTA CAGTTATGCA AGAACAGCCA CAGCCACAGC
    AGCAGCCGCA TTTGATGTCA AATAATCATC ACCAAACACA TGGAGGATGG
    CAGAGCAATG TTGCAAGGGT ACAGATGATC ACTGGTGTTG GAGAAGTGAA
    TTGGAGGGAG GAAATGTTTC AGAAGATCAG CGTTTTAAAG AACTCTTTCT
    TTTCCGAGCT TACGGATTTT GACCGTTTAC TTCACAATTG CCAAAAAACA
    GAAGAACAGT TGCAGTCACT ACCTAAAAAG CAAGCTGACC AATACAAGCG
    GATAACAAAG CTCAAGGATG CGGTTAGGAG TGCTCTGGAT TTATTGCAGC
    TCCAGAAGAG CAGCATCGAT GAAGGCATGA AGGTGAAATT CTGCAAGTAC
    GAAAGCTCCA TACATAGCCT ACTCAGATTC TACAGGGAAA CAAAAGCTAA
    AATTAATGAG ATGAATGCAA ATCGTCATAA CAATCAGCAA GAGCAACCTG
    CAGGCCTGCC GAGGCAAAGA ATTACTGACA GAACTCCATC GTCAGCTCGT
    CGGCAAAACC GCAATGACAA CGTGATAGGC CAATCAGAGG ATAAATTGCG
    ATGCAGGGTT GAATCAGTTG TAGCCAAGAA GAAGCCCATC GACCGCCTAA
    TCAACGCTCT GCGGCACAGT GTAGAGGATG ACCGTACGGA CGTCAAGAGG
    CAGAAAACAC GGCATGTTAA CAGTGCCCTG GCGAACGAGA TCGACGCCAT
    GAACGCCAAG CTGATCGATA CCGTGGTTAG AATCGCCGGT GAGAAAGATG
    GTGGGACAGA GATTGAATTC AGCTACACTG CAGTGTCTCT TGCACTAGAC
    ATGAAGCAGC TATTTGCAGC ATATGGGACG TCTCCTGTCA AGCCGGTGAA
    ACTATTCGTC CCTGCTGATT ACCCTCGAAG TTCTCCGGTG GTCTCGAACA
    ACAACGATGA TGGAGATGAA CAGCGGCGAG GAATGTTCGG CGAGATCTCG
    GGCATGGTCA GTGCGGCTTT TCACTGCGCG CTGCGTGAGC TCCCGCCGTC
    CATGTCAGTC AAGCAGATGG CCTCGGAGTG GAATTCCTGC GTGCAGATGA
    TCATGAAGAA ATTTGCGATA CGGCACGGTG GAGGAACGTT CAGCTCCAGG
    CATGGCCAGT GGATGGATTG CACCGTTGAA TGATTTAGTA CCGTGAGGTA
    CCGATACCTC GAGATACTTT TTGTTGTACC GAAGCAAATC TCTTAATTAT
    TACATGAGGA TGAAGTGATA CGGAGAACCG TATTTGATCT GTTGTTATTG
    CTGCTGGAGG GTACATGCAT AATCCGCTCT GTGTATCATT TGTTTTGATT
    AAGCTGGTAT TGCTTTTGAT ATTTCTCTGT CTGGATTTTG TAATTGGAAC
    AAGCAAAATC GCTTGTAGGA CATGTATTTC TGAAAATGGT AACTATCTAT
    CTTTGAAGAG CCC

    Gene models with high sequence identity

    1. AT1G15780.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); ...
      E-value: 6e-21; Score: 99.80

     

    InterPro Scan Digest

    See the detailed result >

    AT1G15780.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR