K32513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32513

Determination of introduced cDNA(s)

  • J013106A12 - Rice Full-length cDNAs - Original: J013106A12

    full reading [+] show sequence

    Nucleotide sequence: J013106A12 - full reading 
    GACCTCGCTT CACACTAGCC GAGGAGACGC GAGCGCGAGC TGCTCTCCTC 
    TCCTCCCGCC CCGCGTCGCC GACGTCGAGG CGGCGGTCGA CGTCGACGTC 
    GCCGGGGATG GCCGGGCAGC AGCCGCAGCA GCAGGGCCCA CCGGAGGACG 
    ACTTTTTCGA CCAGTTCTTC TCCCTGACCA GCTCCTTCCC TGGCGCCGCG 
    CCGGGCGGCC GCGCCGCCGG TGACCAGCCC TTCTCCCTCG CGCTCAGCCT 
    CGACGCCGCC GCGGCGGCCG AGGCGTCCGG GAGCGGGAAG AGGCTCGGGG 
    TCGGCGATGA CGCCGAGGGT GGCGGCAGCA AGGCGGATCG GGAGACCGTG 
    CAGCTCACCG GACTCTTCCC GCCGGTGTTC GGCGGCGGCG GCGTGCAGCC 
    GCCGAACCTC CGCCCCACCC CGCCTACCCA GGTGTTCCAC CCGCAGCAGT 
    CGAAGCAGGG CGGAGCAGCC GTCGGGCCGC AGCCGCCGGC GCCGAGGCCG 
    AAGGTGCGAG CGCGGCGTGG GCAGGCGACC GACCCCCACA GCATCGCGGA 
    GAGGCTAAGA AGAGAGAGAA TAGCAGAAAG GATGAGGGCC CTACAGGAAT 
    TGGTCCCCAA TACAAACAAG ACAGATAGGG CAGCTATGCT AGATGAGATC 
    CTTGATTATG TGAAATTCCT GAGGCTGCAA GTAAAGGTTT TAAGCATTAG 
    CAGGCTGGGT GGCGCGGGTG CTGTTGCACA GCTGGTTGCT GATATTCCAC 
    TTTCAGTTAA GGGGGAAGCA AGCGATAGTG GGGGCAACCA ACAGATTTGG 
    GAAAAGTGGT CAACGGATGG CACAGAAAGA CAGGTAGCGA AGCTGATGGA 
    AGAAGACATC GGGGCAGCGA TGCAATTTCT CCAATCCAAA GCACTCTGCA 
    TGATGCCAAT CTCGCTCGCC ATGGCAATCT ATGACACACA ACAAACACAG 
    GATGGACAAC CAGTGAAGCA CGAACCCAAC ACTCCTTCCT AGTATAGTAA 
    TAGCAACTGT AAGTCTGTAA CATGAATCGT TACAACCCCT AGTAGACATC 
    AACCTATCAA AGTGTAAGAT AAAACAGCTC GTTTTGATTC ACTAACAAGG 
    AGGCAGGAAA AGACCTAAGA GATCCTCTCC ACTTGAAGTT GTACCAATGG 
    TATATGATGT CACCTTTCGT TATC

    Gene models with high sequence identity

    1. AT4G02590.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 1e-41; Score: 167.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Helix-loop-helix DNA-binding domain 0.0000047
    HMMSmart Helix-loop-helix DNA-binding domain 0.0000000012
    superfamily Helix-loop-helix DNA-binding 0.00000000000036
    ProfileScan Helix-loop-helix DNA-binding domain 12.631

    See the detailed result >

    AT4G02590.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    unfertilized embryo sac 12 (UNE12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G03040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR