K32514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32514

Determination of introduced cDNA(s)

J033132M08 - Rice Full-length cDNAs - Original: J033132M08

full reading [+] show sequence

GACACCCCCA TCCCCTCTCT CCGCGCCTCG CCTCGCCACC CGCATCGCCA 
TCTCGCACCG CCACCTCCTC CACTCTCGGC GGCGGGGGCC TCATCGATGG 
CGTCGAGGAT GGCGCTCCGG CCCAACGACG TCACGCTCCG CCTCACCCCG 
CCCCTCGCCG CCGCCGCGCG GCGCAACCGC CGCGCCGCCG CCGGCGGTGT 
CAGGGTCTAC GCCGTCGCGT CCGGGGCCGT CTCCACCAAG GTTGAGAACA 
AGAAGCCATT TGCTCCTCCA CGAGAGGTGC ACGTCCAGGT TACACATTCC 
ATGCCACCCC AGAAGATTGA AATATTCAAG TCTCTTGATG ATTGGGCCAG 
AGATAATATT TTGTCCCACC TTAAGCCTGT CGAGAAATGT TGGCAACCAC 
AGGATTTTCT TCCTGATCCA GCCTCAGATG GGTTTCATGA TGAAGTCAAA 
GAACTTAGAG AACGTGCCAA GGAAATTCCT GATGATTATT TTGTTTGTTT 
GGTTGGAGAC ATGATTACGG AGGAAGCTCT TCCTACGTAC CAGACTATGC 
TTAACACTCT CGATGGTGTC CGAGATGAAA CAGGTGCAAG CCCCACTGCC 
TGGGCTGTTT GGACAAGGGC ATGGACTGCT GAGGAGAACA GGCATGGTGA 
CCTCCTGAAC AAATATCTCT ACCTCACTGG TAGGGTGGAC ATGAGACAAA 
TTGAGAAGAC AATTCAGTAT CTTATTGGCT CTGGAATGGA CCCTAGGACA 
GAGAACAATC CTTATCTTGG ATTCATCTAC ACCTCCTTCC AAGAGCGTGC 
GACCTTCATC TCACATGGGA ACACTGCTCG CCATGCCAAA GACTTTGGCG 
ACCTAAAACT TGCACAGATC TGTGGCATCA TCGCCTCAGA TGAGAAGCGT 
CATGAGGCTG CATACACCAA GATTGTTGAG AAGCTGTTTG AGATTGACCC 
TGATGGCACT GTGCTTGCTT TTGCTGACAT GATGAAGAAG AAGATCTCGA 
TGCCTGCCCA CCTGATGTTC GATGGGGAGG ATGATAAGCT CTTTGAGCAC 
TTCTCCATGG TTGCACAGAG GCTTGGTGTT TACACCGCCA AGGACTACGC 
CGACATCCTT GAGTTCCTCG TTAGCAGGTG GAAGATATCT GACCTGACTG 
GCCTATCTAG CGAGGGAAAC AAGGCGCAAG ACTACCTTTG CACCCTTGCT 
GCTAGGATCA GAAGGCTGGA TGAGAGGGCA CAATCGAGAG CCAAGAAAGC 
TGGTACATTG CCTTTCAGCT GGGTATATGG TAGGGAAGTT CAACTCTGAG 
CATCAGACGC CATTGCGACT TCTTCGAGCT CCAGTGTTAC TACTGTCCGT 
GCTTGTCGAG ACACATTTTG AGAACAATAC CAGGTGTGTC TTGCTACATA 
GTTCTTCAGG TTGACCAAAT GAACTGAGGG CATATGTTCG TGGTATCTTT 
GCTTAGAGTG ATAGAGAGAT TTGCGTCTGT GTTTTAGCTC TTTTTTTCTT 
TTCTGCCTTT TCATGTACAA CTTCTGGCCG TGTGGATTGG ACATGTACTG 
AACGTGAGTC TGTCGTTGGC CGTGTCAATC TGCTCGTGTG TTTAAACTGG 
CTGCTGTTCA GGTCTGAAAA TTTTGTG

Gene models with high sequence identity

AT2G43710.2 [+] show detail - Plant stearoyl-acyl-carrier-protein desaturase family protein
E-value: 4e-171; Score: 598.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Fatty acid desaturase, type 2	8.5e-185
HMMPIR	Fatty acid desaturase, type 2	1.4e-262
superfamily	Ferritin/ribonucleotide reductase-like	7.5e-163
Gene3D	Ribonucleotide reductase-related	4.9e-155

See the detailed result >

AT2G43710.2

Model type: Protein coding
Short Description: Plant stearoyl-acyl-carrier-protein desaturase family protein
Curator Summary: Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates.
Computational Description: SSI2; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, stearoyl-CoA 9-desaturase activity; INVOLVED IN: in 10 processes; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1); Has 946 Blast hits to 938 proteins in 221 species: Archae - 0; Bacteria - 436; Metazoa - 2; Fungi - 0; Plants - 450; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link: InterPro Scan - TAIR