K32516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32516

Determination of introduced cDNA(s)

  • J013035O04 - Rice Full-length cDNAs - Original: J013035O04

    full reading [+] show sequence

    Nucleotide sequence: J013035O04 - full reading 
    GACATTTCCC CCTCCTTCCC TCCTGCCCTG CCTCCTCGGC CGGCGCGGCG 
    CCCCATGTAC GTGGCTCGAC CGACGGCGAT CGCCGGCCCT ACCCCTACCG 
    CCCGCGGCGC ACGTCGCCTT CCGGCTCCGG GATTGTTAAT TACCGTTTCG 
    AATCCAGCAG TTTGACAGCA AAGAGAAACA GAGGGATCAT CGAGGAAAAA 
    AAAAAGGGCT GGGCTACAAG CACATCCAGA TCCAGGCTGG AGTAGGAGGC 
    AGCTGAGCGA GTGTTGTTCC AGTGGTGCCT GCCAACGGAG GTGGCTGGCT 
    CATGAACATT CACCCGTACA ACCAGACAAC CGTACAGCAA GTGCAGAAAA 
    GAGGGACACC AAATTTCAAT TTCAGAAAGA AGGCACTCGA TATACTTCCC 
    GTTCCGGTCG AAGAAGCTGA ATGGAGCCTT TTCTGTTTCA TCACCAGCTA 
    ATGCACTGTT GATAAGAATG CAGAGACTTA CAAATGCATC TTTATTCTTC 
    ACAAGACAGG AGGCGTTGGT GCTATCAAAC ACCTCACCAA GAAGCATCTT 
    ATTGATCACC TCATCTCTAT GCCACCCGGT CAATTTCGTC ATGGCAGCAT 
    TCCACTCAGA GCACCATCCA AATTCGTCAG CACCAAATAT GGGAGGAATA 
    AGCGGGCTTG GATTGTGAAT AATTGCTTTG TAGTCTCCCT CAACCCGAGT 
    AAATTTGTCC ATGACCAACT TATGAACAGT CATATCTTGT GCAACAAAGC 
    ACACACCAAC AACATGGTCG TGAAGGTCCC GGCTGGCACA GGCATTCACA 
    ACCAAGATAA CAGGGCCATC ATCTCTCTTG GAGCCATGAG TTTTCACCTC 
    AAATTTCACT TCCTTCTCTT CTTTGCCTGA TCAATCAAAG AAATGTTTAG 
    AAATCAATCA ACCCACAACG CAGCTGAATG TCAAGTATTA ATGTATGAGC 
    ATGACAATCA AATGTAGCAT ATCTAGGCAT TGAACATTAG AAAGCAACCC 
    CAAAGTTTTT TTGATAAATC GAATTGCCAA ATAAGCAGAA ACTTGAAAAA 
    TACTGGGGGA ATAGACAAAA ACCACTATAG CTAATTTACC CACCTTGCAA 
    AGCTAAATAC AGCATCCTCT GGACAACTGG TACAGAAGAT TCCTCTACAA 
    CGGTAAGTAT GTGTCTTCCA ATAGCCTCAT CTACTCTCAA CCCTGTCAAC 
    TCAGCAACCT TCTGATTCCA TCCATTGACC AATCCATTGC TATCTACAGC 
    CAAGATTGGG ACAGTTGCTG TTTCCATGAG ACGAACCATT TCACTTGTAA 
    CTGCCTGCAA TTCAGCAAGC CCATCAAGCT TGAGATCACC AACCTGATTA 
    TCTAAACTAG CGGCCCTTGT TGGCTTGATG TCATCATTCA GTGTCCCTCT 
    AAGTATAAGT TGTAATGAGT GAATAGCATC CATCTCATAG TCATTCCAAG 
    GCAAGCTCTT CATCTTGACA ACCTCAAGGA ATGCCTTGAA GGACAGCCTA 
    GGGTGCATTC TTCTGCTGTC ATCCTTGTCT GATGGATCAT GTTTTGCACC 
    TCCCCATCTG ATTTCAGCAG CTGTATGTGA CCTGAACCAG AACAGGATAT 
    CCTTGGAATT TATTTTAGCT ACTGCCATTC CACAAATCAT ATCACCAAGA 
    GCAGCAGCTC CTGGATATCC AGCATCATGT AGGCTATCAG TACTCAGGCC 
    AGTGGAATCC CTGTGGACAT CTGACAGCCA GAAGGCAATA TCACGTATCT 
    GAGACTCAGT TGGAGCATTC TGTAGCCGCC ACACTTTTCC CCCATACAAA 
    AGAGCAGCAC CATCACATTT CACAAGGTCC ATGATGTTGG GAGTCCCTGA 
    TACTATACTC AGAGGAGAGG ATTCCCTGAG AAGCATGTCA GAGAGCATTG 
    TTTGCATCCT CAATATGCTT TTCTCGCGTA CTTGCCTCTC TAATTCAAAC 
    TCCTTGTTAA CATGGACAGC AAACACTTGT GCTAAGAACT CACAGGCATA 
    CCGCAATGGG AAAGGAACAT ATCTGGGGCT CTCATGGTGG CAAACAAGGA 
    GTCCCCATAG TTTCTTCCTC TTCTGCTGTT GTGCAGGTTG ATCAGCCCCA 
    ACTTCATCAT CATCCTCATT CTCATTAACC ACAACAGCCA TGACAAGGGA 
    TGCAATCGAG TTCATGTTCT CCATATACTG AAGATGACAA CTGTGTGGTG 
    CCCTCAGTGT TGAACCACAT AAGCTAATAT CCAAGTGGAG CGACTCATCT 
    TCGATAATCT TGATAGATCT TGCACGGCAA TCACAAATCA TCCGGACTTT 
    GTTCTTCATG AAAAGAAACC TGGCTGCCTG AGGGATATCA GTAGCTGGAT 
    AATGCAGGCC AAGATAAGGT TCAAGACCAG GCTTTGTGAT CTCAGCAAAG 
    ACTTCACCAT GGTCATCTTC ATGGAACTTA TAAGCCATAA CTCTATCATA 
    TCCTGTGAGG TCAAAGAGTT CCTTGACCAC CGTATTGCAT AGCACCTCCA 
    TGCTTCCACC TGGCAGTGAC TGGATCTTAG AGATTGCCTT GGCAGCAAGT 
    TTGTAAGATT GCAAAGCCCC AGCGGCAGTT GCTGGAAATT CTGTAGGTTT 
    CACAGGCTCA AAGTCTACCA CCAAACAACC AGTTGCCCGA TGAACAATGG 
    CATAGAAAGG CTTGCCTGAG GTCTTGCATT GAACTAGGAT AGGGTTCAGC 
    AAGGAAACAT CAGCAAATCC CAGTGCCTTC TGCAGTGCTG TGGCACCTGG 
    GTCAGTGAAA AGAGACCATA CATTGGTGCC AATGCGTAGC TTTGGGGGAT 
    CATCAACACT TGGCACTGCA TGGCTGACAG TTGTAAGCAT CTCTGGTGCA 
    TTCTCGCTGA GCGCTATAAC ATTGAAGGTC TTCTCATCAA GGGCCAACAA 
    GCAACCAAAT GGTTGGATTA GCTTTGCTCT CTGAATGTGA TGCAAGTAAG 
    CTATGACCTT CTCAGAACGA GCTTGCTGCT CAGGTCCAGT AGTTCTCTGT 
    GCTTCAACCA ATTTGGAGTA ATCAAAGGAG TCGCCATATT CTTCATATTC 
    AGCATTGAGT TCAGCATCAA GAGTTGTTTG TGCTAATATC CTTGCCCGGG 
    AGCTTTGGCG GGTCCTGCTG GATGAACTGG AACATTGAGT AGGTCTTGAA 
    GAAGACATCT TCTGCCTTGA TTACCTGAAT CACTCAAGAG TCTTATCTGC 
    TGTATACCAC TCCTGCTGAA CAAGATAATA TAAGTTGAAA ACATCAATCA 
    GTAAAACAAA AAAGTATAGC AATCCACTAA TATCAATAGA TGCCTCAATC 
    TAGTGGATAA ATGTGGACTA TCAACTTTGA TCAATGCCTA AAACCACATG 
    ATTAGACTTC CTTGTTGCCT GAGCAGTTCA GAAAAGAGAA ATGTTTTTGT 
    CTTTCAAGAG CTTGAGAAAT ATAAAAAGTT AGCCCTGCTA GAACTCGATG 
    GATGAAGTAA GAACGGTTGA CGAAGTAAAA TAATACAATG TTAAAGATGC 
    TATTGAAGAA CGGTCAACAA ATCTTAGAGC ATTAGAGGAC TAAAGTTTCT 
    CCAAATACAA CTGCAGGCAC TTGTGTTAGC AAATAAGCAT GACATCTCCT 
    GTAAAGCCAA AACCTTTCTG AGGAATTTCC TTCACTAATC TGTGATAAG

    Gene models with high sequence identity

    1. AT1G09570.1 [+] show detail - phytochrome A
      E-value: 0; Score: 943.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam PAS fold 6.7e-20
    HMMPfam Phytochrome, central region 2.8e-67
    HMMPfam PAS fold-2 3.6e-37
    HMMPfam GAF 5.4e-37
    HMMPfam PAS fold 2.2e-12
    HMMPanther PHYTOCHROME A 0
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 0
    HMMPanther PHYTOCHROME A 7.4e-11
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 7.4e-11
    FPrintScan Phytochrome 3.9e-17
    FPrintScan Phytochrome 3.9e-17
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    FPrintScan Phytochrome 5.1e-88
    superfamily PYP-like sensor domain (PAS domain) 9.8e-08
    superfamily PYP-like sensor domain (PAS domain) 2.8e-12
    Gene3D no description 1.2e-06
    HMMSmart GAF 2.2e-11
    HMMSmart PAS 1.2e-07
    ProfileScan PAS 13.516
    ProfileScan Phytochrome chromophore attachment domain 62.128
    ProfileScan PAS 19.246
    PatternScan Phytochrome chromophore binding site 0

    See the detailed result >

    AT1G09570.1

    Model type
    Protein coding
    Short Description
    phytochrome A
    Curator Summary
    Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.
    Computational Description
    phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1); Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337; Bacteria - 24139; Metazoa - 4; Fungi - 596; Plants - 4116; Viruses - 7; Other Eukaryotes - 1154 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR