K32532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32532

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32532

Determination of introduced cDNA(s)

  • J013072C02 - Rice Full-length cDNAs - Original: J013072C02

    full reading [+] show sequence

    Nucleotide sequence: J013072C02 - full reading
    GATCGCCACA CAGAAACCTT CAGGGCAAGA GCTATAGCTA AGCTACTGTG 
    TCACCCGTTC GATCGGTGAG CCGACGCCAG CACACGCGCC GCAACGTTTG
    CGCTTAGCCG GCATGGCGTC GTCCTCGTCG TCCCGGCTGC TCTTCCTCCT
    CTCGTGCAGC GTGCTCGCGC TGCTCGCCGG CGCCGAAGTG CACCATCATG
    AATTCATTGT TCAAGAGACG CCGGTGAAGA GGCTGTGCAA GACACACAAC
    GTGATCACGG TGAACGGGCA GCTGCCGGGG CCGACGCTGG AGGTCCGGGA
    GGGGGACACC GTGGTGATCA ACGTCGTCAA CCACGCGCAG TACAACGTCA
    CCATCCATTG GCACGGCATC CGGCAGTTCA GGACGGGGTG GGCGGACGGG
    CCGGAGTTCG TGACACAGTG CCCGATCAAG CCGGGCGGCA GCTACAAGTA
    CCGGTTCACC ATCGAGGGGC AGGAGGGCAC GCTGTGGTGG CACGCGCACA
    GCTCCTGGCT CAGGGCCACC GTCTACGGCG CGCTCATCAT CCGCCCCAGG
    GAGAACAAGA CCTACCCCTT CGAGAAGCCC GCGCGAGAAG TCCCCCTTAT
    TCTCGGGGAA TGGTGGGACG CGGACCCGAT CCAAGTCATC AGGGAGGCTC
    AGAGGACCGG CGCCGCGCCG AACATCTCCG ACGCGTACAC CATCAACGGT
    CAGCCTGGTG ATCTGTACAA CTGCTCCAAG GAAGAGACCA CGGCTGTCCC
    GGTGAAGCCC GGCGAGACGG CGCTGCTGCG GTTCATCAAC GCGGCACTCA
    ACCAGGAGCT GTTCGTCTCG ATCGCGCAGC ACAAGATGAC CGTGGTCGGC
    GTCGACGCGT CCTACACCAA GCCGTTCACC ACCTCGGTGC TCATGATCGC
    GCCGGGCCAG ACCACCGACG TCCTCGTCAC CATGGACCAG GCGCCCACCC
    GGTACTACCT CGCCGCGCGC GCCTACGACT CCGCGCAGGG CGTGGCCTTT
    GACAACACCA CCACCACGGC CGTCATCGAG TACGACTGCG GCTGCGCCAC
    CGACTTCGGC CCCTCCATCC CGCCGGCGTT CCCGGTCCTC CCGGCGTTCA
    ACGACACCAA CACCGCCACC GCCTTCGCCG CGGGCATCAG GAGCCCCCAC
    GAGGTCAAGA TCCCCGGCCC CGTCGACGAG AACCTCTTCT TCACCGTCGG
    TGTCGGCCTG TTCAACTGCG AGCCCGGGCA GCAGTGCGGT GGCCCGAACA
    ACACTCGCTT CACGGCCAGC ATGAACAACA TCTCCTTCGT CTTCCCGCAG
    ACCACCTCGC TCCTCCACGC GCACTACTAC GGCATCCCCG GCGTGTTCAC
    CACCGACTTC CCGGCGTACC CGCCGGTGCA GTTCGACTAC ACGGCGCAGA
    ACGTCCCCCG CTACCTGTGG CAGCCCGTCC CGGCGACGAA GCTGTACAAG
    CTCAAGTTCG GCTCCGTGGT GCAGATCGTC CTGCAGGACA CCAGCATCGT
    CTCGCCGGAG AACCACCCCA TCCACATCCA CGGCTACGAC TTCTACATCC
    TCGCCGAGGG CTTCGGCAAC TTCGACCCCA AGAAGGACGC CAAGAAGTTC
    AACTACGTCG ACCCGCCACA GAGGAACACC GTCGCGGTGC CGACAAACGG
    CTGGGCCGTC ATCCGGTTCG TCGCCGACAA CCCTGGGGTG TGGCTCATGC
    ATTGCCATCT TGACGTGCAC ATAACCTGGG GCCTGGCAAT GGCGTTCCTG
    GTGGAGGATG GGTATGGCAA ACTGGAGACT CTGGAGGCGC CTCCTGTTGA
    TCTTCCAATG TGCTAGTGAT CAGCATTCGG CAGATGATGA TACTGCGTTA
    AGAATACAAA ATCCCGTTCA TGTCGTATTC CAAATTGATG CTTTTTGGGG
    GTTTATTTTG TGATCTCCAG TACTAGGGGT TGATTTTTCA TCTTGATTTG
    AGCTTTCCCC TGTAAAGTTA AGAGTTTTTA TGTGATTTCT ATGCATTATT
    TTGGAATAAA TCCTTTTTGT AGC

    Gene models with high sequence identity

    1. AT5G05390.1 [+] show detail - laccase 12
      E-value: 0; Score: 802.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cupredoxin 4.2e-53
    superfamily Cupredoxin 5.1e-46
    superfamily Cupredoxin 1.8e-44
    Gene3D Cupredoxin 5.8e-45
    Gene3D Cupredoxin 3e-51
    Gene3D Cupredoxin 2.4e-58
    PatternScan Multicopper oxidase, copper-binding site 0
    PatternScan Multicopper oxidase, copper-binding site 0
    HMMPanther LACCASE 1.7e-295
    HMMPanther MULTI-COPPER OXIDASE 1.7e-295
    HMMPfam Multicopper oxidase, type 3 1e-47
    HMMPfam Multicopper oxidase, type 2 1e-40
    HMMPfam Multicopper oxidase, type 1 1.2e-42
    HMMTigr Laccase 0

    See the detailed result >

    AT5G05390.1

    Model type
    Protein coding
    Short Description
    laccase 12
    Curator Summary
    putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
    Computational Description
    laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR