K32540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32540

Determination of introduced cDNA(s)

  • J013154D06 - Rice Full-length cDNAs - Original: J013154D06

    full reading [+] show sequence

    Nucleotide sequence: J013154D06 - full reading 
    GACCGATCCC TCTCCCTCTC CCGCCGCCAC CGCCTCCGCC TCCGCCTCCC 
    CTCGCGCCGT CGCCGTCGCC AAGAGCCGCC ACTTCCGCTT CCGCCTCTGC 
    CTCGTCCAAG TCCAAGCCAA CTACCTAAAC CTAAACCCTA TTCTTCTTCT 
    TTCGCCTCCG CCGCGATGTC GTCGGAGCCT CCACCCGATG CCGCCGCCGC 
    CGCCGCCTCC TCCGCGGGGG ATCTCGCGGC CGATCTCTCC TGCCACCATC 
    AGCAAGAAGC AGCTCAAGAA GGATGCGAGG AAGGCGGAGA AGGCCGAGAA 
    GGCGTCGCAG CGCCAGCAGC AGCAGCAGCC GCAGGCCGAC GCCGACGACC 
    CCTTCGCGGC CAACTACGGC GACGTCCCCG TCGAGGAGAT CCAGTCCAAG 
    ACCATCTCCG GCCGCGTGTG GACCGAGATC GGCGGCCTCG ACGAGGCCGC 
    CGCCGGCCGC TCCGTCCTCA TCCGCGGCGC CGCGCAGGCG ATCCGGCCCG 
    TCAGCAAGAA GATGGCCTTC GTTGTGCTGC GCGAGAGCAT GAGCACCGTC 
    CAGTGCGTGC TCGTCGCCAG CGCCGACGCA GGGGTCAGCA CCCAGATGGT 
    GCGCTTCGCC ACCTCCCTCA GCAAGGAATC AATCGTCGAC GTCGAGGGCG 
    TCGTCTCCCT CCCCAAGGAG CCCCTCAAGG CCACCACGCA GCAGGTGGAG 
    ATCAGGTGAG GAAGATCTAT TGCATCAATA GGGCGATCCC CACCCTTCCA 
    ATCAACCTTG AGGATGCCTC ACGGAGTGAG GCTGAAATTG AAAAGGCTGA 
    ACAAGCTGGA GAGAAGCTAG TTCGTGTGGG CCAAGATACT CGCTTGAACT 
    ATAGAGCTAT TGATCTCCGG ACACCTGCAA ATCAAGCAAT ATTCAGAATT 
    CAATGTCAAG TTGAGAACAA ATTCAGGGAA TATTTTCTGT CGAAAAATTT 
    TGTTGGGATT CACAGCCCAA AGCTAATTGC TGGATCCAGC GAAGGTGGTG 
    CAGCTGTATT CAAGCTACAG TACAATGGAC AGCCAGCATG TTTAGCACAG 
    TCTCCTCAGT TGTATAAGCA GATGGCTATT TGTGGTGGGT TTGAACGTGT 
    ATTTGAGGTT GGACCTGTTT TTAGAGCTGA GAATTCAAAC ACTCACAGGC 
    ATCTGTGTGA GTTTGTTGGC CTTGATGCTG AGATGGAGAT TAAGGAACAT 
    TATTTTGAGG TTTGCGACAT AATAGATGGT TTGTTTGTAG CAATATTTAA 
    ACACTTGAAT GAAAATTGCA AGAAAGAACT AGAGACAATA AACAGGCAAT 
    ATCCATTTGA ACCTCTGAAG TATTTAGAGA AAACTTTGAA GCTCACGTAT 
    GAAGAAGGAA TTCAAATGCT GAAGGAAGCT GGAACAGAAA TCGAACCCAT 
    GGGTGACCTC AACACTGAAG CTGAGAAAAA ACTAGGCCGG CTTGTTAAGG 
    AGAAGTATGG AACAGAATTT TTCATCCTCT ATCGGTATCC TTTGGCTGTG 
    CGTCCCTTCT ACACCATGCC TTGTTATGAC AACCCAGCTT ACAGTAACTC 
    TTTTGATGTC TTTATTCGAG GAGAGGAAAT AATATCTGGA GCACAAAGAA 
    TACATTTACC AGAGCTATTG ACGAAACGTG CAACAGAGTG TGGAATTGAT 
    GCGAGTACTA TTTCATCATA TATCGAATCG TTCAGCTATG GTGCACCTCC 
    TCATGGTGGT TTTGGTGTCG GCCTGGAGAG GGTGGTAATG CTGTTCTGCG 
    CCCTAAACAA CATCAGGAAG ACATCACTTT TCCCTCGCGA TCCACAAAGG 
    CTGGTGCCAT AATTTGCTTT TTTTCCCAAG AGCAAGGTTT GGACTCAGTA 
    CGGACTGGGC AGTTTTCCTC GGCTGGTTTT TTTACCTGGA CATTATTTTC 
    GTATTTATTA ATGTGCTGTA CTGCAAAAGC TGCTCCTTTC CACAACATTT 
    GGAATAGTTG CCGATACATT TGGAATAGGG CTCAACGTTG GCGTTGTGAT 
    TTCGTTGATG ATTCCGCTAT TCGTAACAAT GGCGAATCCA GAGCAGAAAT 
    GACCCTATGT CAGAAACATA TCACATACTC GTATGCCTAT ATTTCCAAAA 
    GATAAGGGAT TATGGAAGGA TGACATATTC AAGTCCCAAA ATACAAGGTG 
    TGGTTTGACC

    Gene models with high sequence identity

    1. AT4G31180.2 [+] show detail - Class II aminoacyl-tRNA and biotin synthetases superfamily protein
      E-value: 0; Score: 112.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 19.074
    HMMPanther ASPARTYL-TRNA SYNTHETASE 8.5e-175
    HMMPanther Aminoacyl-tRNA synthetase, class II (D/K/N)-like 8.5e-175
    FPrintScan Aspartyl-tRNA synthetase, class IIb 2.2e-22
    FPrintScan Aspartyl-tRNA synthetase, class IIb 2.2e-22
    FPrintScan Aspartyl-tRNA synthetase, class IIb 2.2e-22
    FPrintScan Aspartyl-tRNA synthetase, class IIb 2.2e-22
    HMMTigr Aspartyl-tRNA synthetase, class IIb, archea/euk type 2.1e-145
    Coil coiled-coil 0
    superfamily Class II aaRS and biotin synthetases 6.1e-101
    superfamily Nucleic acid-binding, OB-fold-like 4.6e-25
    HMMPfam Aminoacyl-tRNA synthetase, class II (D/K/N) 3.9e-78
    HMMPfam Nucleic acid binding, OB-fold, tRNA/helicase-type 0.0000088
    Gene3D no description 4.9e-98
    Gene3D Nucleic acid-binding, OB-fold 7.7e-27

    See the detailed result >

    AT4G31180.2

    Model type
    Protein coding
    Short Description
    Class II aminoacyl-tRNA and biotin synthetases superfamily protein
    Computational Description
    Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aminoacyl-tRNA ligase activity, aspartate-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT4G26870.1); Has 27000 Blast hits to 21362 proteins in 2984 species: Archae - 448; Bacteria - 18821; Metazoa - 751; Fungi - 935; Plants - 402; Viruses - 0; Other Eukaryotes - 5643 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR