K32541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32541

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32541

Determination of introduced cDNA(s)

  • J023101G11 - Rice Full-length cDNAs - Original: J023101G11

    full reading [+] show sequence

    Nucleotide sequence: J023101G11 - full reading 
    GACAAGCCAA GGGCCACGAT TCCAGATCAA ACGCCACAAA CTAAAAAATA 
    AAAAAAAAAT CGGAAGAATA GAGAGAGAGA GAGAGAAAAA GAACGATGAG 
    AGCCTCCCCG AGCGCGCCCA CCTCCCACGG CTCCGGCTAA AACCCTAGAG 
    CGCGCGCGCG CGAGCGCGGA TGCCCCTCGC TCTCCTCGCC CGCGCCGCTC 
    TCTCCTCCAC CTCCTCCTCC ATCGCCATGG CCACCACGCG CTCCTCCTCC 
    TCCAGGGTGC TTCGTGCCTC CCGTGCGGAG CTCAACCCAG GTGCTAAAGA 
    AGTGAAACGT GAATCCAGTG TTTCTTTTGA CTTGACCAAA ACTGAAGCGG 
    TTGCTTCCAT GAGAAGCAAA AATGTGAAAC GGGTGCTTGA AGTAACTGGG 
    GAAAATATTA AGAAAGAGGT TGATATCGTT CCTGACATTG AAGATTTTCG 
    ATATGGCAAG GCATCGCCAT CTTTAGTTAG GTTGGAGAAA AAGGTGAGAG 
    TTTCATCTGC TATAAAAGGT ACTCAGAAGA CTACCTGATG AGAGAAGCTA 
    TGCATTTCTT GTTTAACATC TTTGTAATTT TCTTGTTATG TGTTAGTTTC 
    TTTCTCTGCC AGCTGATATC AAGTTAAATC TGTACAAACA ATATTGACAA 
    TACTTTACTG AAGTTTTCAG TTATATATTT TATATATTGC TAAAATGTTT 
    ATGCTGCTCT GGATTGCAAA AATAAACAAT CACTAGATTA TGACTTGCAT 
    CATCTTAACC AGAAGGCAAT ATAGTACTAC ATATTGGTTC ATACATGATG 
    GCTATTCATT CCTCAATTTC CCACACACAT CATTCATGGA ATATCTAAAT 
    CTGTTGTTAA GTTCAAAATT TTCATTGCAT GTTCACCTAC TATTAACAAA 
    AATAACAATC CTAGCTGCCA AAAAGCTGCC AGGTTGGTAG CAGAATGTTC 
    AACATCAGAT TCAGTGTATC CTTGTGACAC ATATTAGTGA TTATGTGGCC 
    ATTATGGCAT TATCAATTGC TCTACCGTTT AAACACAATA TATGTCAAGA 
    CAATGATTTG TTGTCTATTG TGTGAAATTT TTTTCATACA TTTATGCAGT 
    TGGAGCTCCA GAAAATTGGG AGGCAATCCT TAAGGGTATT AAAAACATGA 
    GGTTATCTGG CGAGGCCCCT GTAGATACAA AGGGCTGTGA AAAAGCTGGT 
    TCTCTTCTTC CACCCAAGGA AAGGAGATTC GCAGTTTTGA TATCAACCAT 
    GATGTCAAGC CAAACAAAAG ATGAAGTTAC ACATGGTATG TCTCATGAAG 
    ATTTCTTTTT TGGAATTGGT TATACACTAT TTTTGCTAGC CTTGTTATAG 
    TTTTCCTATA GCTAAAATGT GAAAAATGAA AAAGAGCATG TGATCTATTC 
    TGATTGGAGT GTTATGCATA CTCTGCTGTG CAATGGTTCA GATGATAATA 
    TGTTCTTAAT AATTGATTGG TAGTACAGAA CTTCATGCTA TGTGACCATC 
    CTGTGTCTAT ACCCTTCCAT TTGTTTCCCC ATTGAACTAA CCTTGTCATA 
    AACATCACTT TATGTACCAC AACTATGTCT GTTTGCTGCA TCTGTACTAT 
    ATTCTTTCAT ATAAATGATT ATTGTATTTT GGATCAATTG TTATCAGCTG 
    CTGTTGAACG TCTATCTGAG AAAGGTTTAC TTGATCCGGA TGCTATTGTC 
    CGAACAGATG AGGCCACACT AGCGAATCTT ATCAAACCTG TAAGTTGCAA 
    GAACTGTTTG GTGGGAACTT TCCCAACTAC AATAAATTAC TGCTCTGAAC 
    TACCCAATAT AAGGATTGAT CCTACAAATG TACAAAAGAA TATACATGAT 
    CTGCATATCA CAGTATGGGC TCTAGCAAAT GGTAACAAAC CAAACTTTGA 
    ATGCATGCAA TTTAGTTGAA GCATAACCTT GATTTGGACC TCAGAAGACA 
    AGAAGCTAGC TAGAGCTGTA CCTGCTTTGT TAATTGTACT GTTATAGTTT 
    CTTGCTGGAA ATTACTCAGC TCAGCCTTTG ACATCATACT GGTTATTGTT 
    TAATCAGGTT GGATTCTATC AGAGGAAGGC CAAATTCATA AAAGAAGCTT 
    CTAAAATTTG CCTTGAACGT TTTGGAGGGG ATATTCCAGA TTCTCTGAAT 
    GAGCTTCTTG CTCTGAAAGG AGTTGGTCCT AAAATGGCTC ATCTGGTGAT 
    GAGCATTGCA TGGAAGAATA CTCAGGGAAT TTGCGTTGAC ACTCATGTAC 
    ATCGCATATC TAACCGTCTT GGGTGGGTTT TCCGAGAGGG AACAAAACAG 
    AAAACTACAA CACCCGAGCA AACAAGAATG TCTCTTGAGA AGTGGCTACC 
    AAAGGATGAG TGGGAACCTA TCAACCCATT ACTGGTTGGA TTTGGGCAAA 
    CAATCTGTAC TCCACTTAGG CCCAAATGTG ACATGTGCGG CATAAACAAC 
    ATCTGCCCTT CAGCTTTCAA GGAATCATCA AGCCCAAATC CAAAGCAAAA 
    GAAAATGAGG TCATCTTAGA ACTTTTTGGC AGGGATGCCT TGTGTACTTT 
    GTGTACATGC ATTATTTACT GACCTGCTAG TGCTGGAATG CTCTTCTAAA 
    AGGTTGGCAT ATTTATTGCC TGGATGACCT TCCTGCAGCC ATCTATCATT 
    TTGTATAGCC ATTATGTAGC ATTTTGTATA GCCGTAATCT ATTGAGACAA 
    TGGGTAGGGA CATTGATCTT GCCAGTTATT TATTATGGGC AAACAACTGG 
    CACTTGGTAG G

    Gene models with high sequence identity

    1. AT2G31450.2 [+] show detail - DNA glycosylase superfamily protein
      E-value: 3e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam HhH-GPD domain 2.8e-11
    HMMPfam Helix-hairpin-helix motif 3.6e-09
    HMMPfam Endonuclease III-like, iron-sulphur cluster loop motif 0.00031
    superfamily DNA glycosylase 9.3e-44
    HMMPanther ENDONUCLEASE III 5e-07
    HMMPanther A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE 5e-07
    HMMPanther ENDONUCLEASE III 3.9e-73
    HMMPanther A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE 3.9e-73
    Coil coiled-coil 0
    HMMSmart HhH-GPD domain 5.9e-31
    HMMSmart Endonuclease III-like, iron-sulphur cluster loop motif 1.7e-05
    Gene3D no description 2.3e-33
    PatternScan Endonuclease III, iron-sulphur binding site 0

    See the detailed result >

    AT2G31450.2

    Model type
    Protein coding
    Short Description
    DNA glycosylase superfamily protein
    Computational Description
    ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133 Blast hits to 14127 proteins in 2683 species: Archae - 365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR