K32605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32605

Determination of introduced cDNA(s)

J033039E09 - Rice Full-length cDNAs - Original: J033039E09

full reading [+] show sequence

GCTTTTCTCG CCTTCTTCAG TCCGCGGCGT TGTTCCAGAA GCTTCTGGAA 
AGTCGGGGAA ACCCCCATGG CGTCCGGCGA TCCGGTGGAC GCGCCGGCGG 
CGGCGGCGGA GTCGATGGAG GTGGAGGCGG ACCAGTGCCT CGACCTGACG 
AGCTGCCAGC TGCACGATCT GAGCGAGGTG GAGATCCCGC CCACCCTGGA 
GGAGCTCGAA CTCACGGCGA ACCGCCTCGC CGCCGTCGAC CCCCGCATCG 
GCCGCCTCCC GGGCCTCCGC AAGCTCTCCT TCCGCCAGAA CCTCCTCGAC 
GACGCCGCCG TCGCGCCCCT CTCCACCTGG GCCGACATCG CTGGGCTGCA 
GGAGTTGGTC TTTAGAGATA ACAAACTTAC AACGATTCCT GATGCCAGCA 
TCTTCAAAGG CCTTCTGGTC TTTGATGTAT CTTTCAATGA GATATCTTCC 
TTAAAGGGGC TGTCCAAGGT TTCCAGCACA CTGAAGGAAC TCTATGTTTC 
AAAGAATGAA GTTGCAAAGA TGGAGGAACT CGAACACTTT CATGCATTAC 
AAATTCTTGA ACTTGGTAGC AACAGATTGA GGGTGATGGA AAATCTAGAA 
ACCTTGGCAA ATCTGCAGGA GCTATGGCTG GGAAGAAATC GAATAAAGAC 
AATCAACCTA TGTAGTTTGA AAGCAATAAA AAAATTAAGC TTGCAAAGCA 
ACAGACTGAC TTCAATGAAT GGGTTACAAG AATGTATTGC ACTAGAGGAA 
CTATACCTCA GTCATAATGG AATACAAAAG ATGGAGGGTC TCTCTACCTT 
GCAGAACCTT CGTGTTTTAG ATGTTTCATC CAACAAGCTA ACTGCTATCG 
AAGATGTTGA AACCTTAAGC AGGTTGGAGG ACTTGTGGTT GAATGACAAC 
CAAATACCAT CACTAGATGG GATAGAATCT GCTTTGGCTA GTTCACGGGA 
GAAGCTGACT ACCATATATC TTGAGCGGAA TCCTTGCGCA AAAGCTCCAA 
ACTATTCATC CACGTTGAAG ACAATATTTC CAAATCTTGA GCAACTCGAT 
TCAGATATGC TAGCATGAAA CTGATGTCCT TCTGTGAAGA TAGGGAAGAC 
ACTCCTGGAG TAGCTCTACT AGCGTTGTTT TTTCTAACAA TCAAAGCGTG 
AGAAGCCTTC CAGTTCAAGA ACAAGTAATA ATAAACCATG GATGAAGCAA 
TGCAACATTA TTGTGCTCAA TATCTAAATT GCTTCACCTT TTTTTCCTGC 
TCCATGTTCT GATGCTGTTA CTGGATGGAT CATCGTGGGC TTGTCTTTGT 
CAAACTATAC TCCCATATAC AGAGATCAAG GAAGGTGAGT TAGAGAGGTA 
GAGCGTGTGG GACTGAATGA TAAACCAATA AAACCTAGCG AACTGATGTT 
TTTGACAGAT GATGTTGCAT TTGACTATTC TGTCACAGGA TGTTGCATTT 
GATATTACCT GTACTATGTT GACATGTATG CTATTGCATT TGCTGTAGAT 
GTCTGAGATT GATTCAAGTT TATGAAAGCA GCACACATTT GAATGTTTAT 
GGCTTAACTT ATAAGCATGT GCAACCGTTC CGGTTATTCT GGTTGCTGTC 
ATATGCAGTA AAGTTTTATT CATGATGAAT CTATC

Gene models with high sequence identity

AT5G19680.1 [+] show detail - Leucine-rich repeat (LRR) family protein
E-value: 1e-118; Score: 423.00

InterPro Scan Digest

Program	Description	E-value
superfamily	L domain-like	3.3e-50
HMMPfam	Leucine-rich repeat	0.6
HMMPfam	Leucine-rich repeat	0.87
HMMPfam	Leucine-rich repeat	0.3
Gene3D	no description	2.7e-39
HMMSmart	Leucine-rich repeat, typical subtype	230
HMMSmart	Leucine-rich repeat, typical subtype	24
HMMSmart	no description	25
HMMSmart	no description	4.4
HMMSmart	no description	0.018
HMMSmart	Leucine-rich repeat, typical subtype	7.5
HMMSmart	no description	25
HMMSmart	no description	6.6
HMMSmart	no description	0.21
HMMSmart	Leucine-rich repeat, typical subtype	26
HMMSmart	no description	0.0032
HMMSmart	Leucine-rich repeat, typical subtype	16
HMMSmart	no description	0.0072
HMMPanther	PROTEIN PHOSPHATASES PP1 REGULATORY SUBUNIT	2.7e-28
HMMPanther	LEUCINE RICH REPEAT FAMILY	2.7e-28

See the detailed result >

AT5G19680.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G22320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR