K32621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32621

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32621

Determination of introduced cDNA(s)

  • J013116O17 - Rice Full-length cDNAs - Original: J013116O17

    full reading [+] show sequence

    Nucleotide sequence: J013116O17 - full reading
    GGCCGTGCCG CCTGCCTCTG CGCATCTGGC TGGCTATCTT ACCTCCCTTT 
    TCTGCGCCGC GTCCTCCTCT CTCTCCTTTC CCCTAGGGCT CTAGCTCCAC
    CGCCTCTCGG CCACCGCCGC TCCCCGCCGC CGCCGCCGAC GACGCGCGAG
    GGAGTGTGGT GAGGACTGAT GAACTTCTAA ACATTGGGTA TGGATGGATG
    TGACTGCATC GAGCCACTAT GGCCAACTGA TGAGCTCCTC ATCAAGTATC
    AGTACATCTC GGACTTCTTC ATAGCCCTCG CATATTTCTC GATCCCGTTG
    GAACTAATTT ATTTCGTGAA GAAGTCATCC TTCTTCCCAT ACAGATGGGT
    TTTGATCCAG TTTGGTGCAT TTATAGTCCT ATGTGGAGCG ACTCATCTCA
    TAAACCTGTG GACTTTCACC ACACACACAA AGACTGTTGC TATGGTCATG
    ACAGTCGCAA AGGTTTCAAC GGCTGTTGTG TCCTGTGCGA CAGCTTTGAT
    GCTTGTACAT ATTATCCCTG ACTTGCTGAG CGTGAAAACA AGGGAATTGT
    TTCTGAAGAA TAAAGCTGAA CAGCTTGATA GGGAGATGGG CTTGATTAGG
    ACACAGGAAG AGACTGGGAG GCATGTTAGG ATGCTTACCC ATGAAATCAG
    AAGCACTCTT GATAGACATA CGATTTTGAA GACTACACTT GTTGAGCTAG
    GAGGGACCTT GGGCCTGGAA GAATGTGCCC TATGGATGCC ATCAAGAAGC
    GGTTCAAGTC TTCAGCTTTC TCATACTCTC CGCCACCAGA TTACTGTTGG
    GTCAACTGTA TCAATTAATC TTCCTGTTGT CAATCAAGTG TTCAGTAGCA
    ACAGAGCAAT TATAATACCC CACACATCTC CTTTGGCACG GATCCGACCT
    CTTGCAGGGA GATATGTTCC ACCAGAAGTG GCTGCAGTGC GAGTTCCTCT
    TCTACATCTT TCAAACTTTC AAATAAATGA TTGGCCAGAG CTTTCAGCAA
    AGAGCTATGC AATCATGGTT CTGATGCTTC CATCTGATAG CGCAAGAAAA
    TGGCATGTGC ATGAGTTGGA GCTTGTTGAG GTCGTGGCTG ATCAGGTTGC
    AGTTGCACTT TCTCATGCAG CTATTCTTGA AGAGTCCATG CGTGCGCGTG
    ATCTGCTAAT GGAGCAAAAT GTTGCTCTGG ATTTAGCTCG ACGTGAGGCT
    GAAATGGCTA TCCGTGCTCG TAATGATTTC CTGGCTGTTA TGAATCATGA
    AATGAGAACA CCAATGAATG CAATAATAGC CCTTTCGTCC TTACTTTTGG
    AAACCGAACT TACTCCTGAG CAGCGCTTGA TGGTGGAAAC AGTCTTGAAA
    AGCAGCAATC TTTTAGCAAC ACTCATCAAT GATGTGTTAG ATCTTTCCAA
    ACTTGAGGAT GGTAGCCTTG AATTGGAGAT TAAAGCATTC AATCTTCATG
    CTGTTTTCAA GGAGGTAATG AGTTTCATCA AGCCAATCGC AGCCATCAAG
    AGACTGTCTG TGTCAGTTAT GTTGGCACCA GACTTGCCAT TATGTGCCAT
    CGGTGATGAA AAGAGGCTAA TGCAAACTAT TTTGAATATC TCTGGCAATG
    CTGTTAAGTT TACAAAGGAG GGCCACATCA CACTTGTAGC TTCTGTTGTG
    AAGGCTGACT CTTTAAGAGA ATTCAGAACC CCAGATTTTC ACCCAACTGC
    AAGCGATGAC AATTTTTATT TGAAAGTTCA GATTAAAGAT ACGGGCTGTG
    GCATTAGCCC TCAGGATCTA CCTCAAGTAT TTACAAAGTT TGCTCAATCT
    CAGCCTGGAG GAAACAGAGG ATACAGTGGT AGTGGTCTTG GCCTTGCCAT
    TTGCAAGAGG TTTGTTACTT TGATGGGAGG GCACATCTGG TTGGATAGCG
    AAGGAACAGG AAGAGGCTGC ACAGTAACGT TTGTCATCCA GCTTGGCATA
    TGCGATAATA CGAATGCATA TCAGCAGAAG CTGATTCCTC TAGTCTGGCC
    AAGCAGTGGG GATGCTGATT TTGTTGGTCC GGTGCCAAAT GCTCCTAATG
    AAGAGAAAGG TCAGGCTTCT CTGAAATCTC GGTATCAGAG AAGTATATGA
    GCTACTGTAA ATTGATCGAC GGCATTGTAT CAAGTAGGGC CTGGTTAGTT
    TGTCTCTAAT TTTGTGCCTA GCCTTGTGAT AGCTGGAATA TATTTGTACA
    AATAATGTAC AGCAGATGGG ACTGCATAAT GCAGCTATGC ACCTGGGTAC
    AACTCTAACT TGCGTAGTGT CCTGTCAGCG AAATGTGTAT TCTGGGCTGT
    TCGTGTG

    Gene models with high sequence identity

    1. AT1G66340.1 [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
      E-value: 0; Score: 780.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart GAF 5.8e-17
    HMMSmart Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 3.9e-21
    HMMSmart ATPase-like, ATP-binding domain 6.4e-35
    HMMPanther ETHYLENE RECEPTOR 0
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 0
    superfamily ATPase-like, ATP-binding domain 1.2e-40
    superfamily Signal transduction histidine kinase, homodimeric 4.9e-17
    superfamily GAF domain-like 1.1e-09
    HMMPfam ATPase-like, ATP-binding domain 1.4e-28
    HMMPfam Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 1.8e-17
    HMMPfam GAF 1.6e-13
    Gene3D ATPase-like, ATP-binding domain 2e-28
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 3.3e-10
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 3.3e-10
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 3.3e-10
    ProfileScan Signal transduction histidine kinase, core 43.194

    See the detailed result >

    AT1G66340.1

    Model type
    Protein coding
    Short Description
    Signal transduction histidine kinase, hybrid-type, ethylene sensor
    Curator Summary
    Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.
    Computational Description
    ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR