K32625

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32625

Determination of introduced cDNA(s)

J013149D04 - Rice Full-length cDNAs - Original: J013149D04

full reading [+] show sequence

GTGCGCACGC TAGTGGAGCA GCTGCTGCAG CGGTTGGCCA CCGCCTCCAT 
CGCCGTCGCC GACTCGCCGC CATCGTCGTT GCCGTCGTCG CCGTCGGCGG 
AGTAGGCAGG CGGCCATGGC GGGGAAGCAC GGCCGCAACG GCTTCGAGGA 
CGACGACGTC AATCCCTTCG CGGGAGGAAG TGTTCCTCCT GCCAACAATT 
CTCGACTCCC ACCTCTCTCC CATGAGCCAG CTGATTTTTA CAATGTGGAC 
ATTCCTCTTG ACTCGTCTAA GGATTTGAAG AAAAAGGAGA AAGAACTCCA 
GGCAATGGAA GCTGAACTAA ACAAAAGAGA AAGGGAACTG AAAAGGAAGG 
AAGAGGCTGC AGCCCAAGCT GGCATTGTCA TTGAAGATAA AAATTGGCCA 
CCCTTTTTCC CTCTCATTCA CCATAATATT TCAAATGAGA TACCTATTCA 
TCTACAAAGA ATGCAGTACC TTGCATTTTC ATCGTTTTTG GGATTGGCAG 
CCTGCCTATT TTGGAATCAT AGCAACCACA ACCGCATGGG TAAAAGGGGA 
AGGTGTTATT ATCTGGTTGC TTGCTATTAT CTACTTCATA TCTGGTGTAC 
CTGGTGCTTA TGTGTTATGG TACCGCCCTC TTTATAATGC AATGAGAACT 
GAGAGTGCTT TGAAGTTTGG GTGGTTTTTT CTGTTTTACC TGATTCATAT 
AATCTTCTGT GTGTGGGCAG CTGTGGCTCC TCCTTTTCCT TTCAAAGGAA 
AATCTTTGGC TGGGATTTTG CCTGCCATTG ATGTCATAGG CAGGAGTGCT 
ATAGTGGGGA TATTTTACTT TGTCGGGTTT GGATTATTCT GCCTTGAGTC 
ACTGCTGAGC ATTGGTGTCA TTCAGCAAGT ATACATGTAC TTCCGTGGAA 
GTGGAAAAGC CGCAGAGATG AAACGTGAGG CGGCACGTGG TGCTCTGAGC 
TCCGCATTCT GATGAAACAT GCCTTGAGCA AAACTGTAGC CAGATGATAT 
GAGTGGGAGG AAACACGAAA CATGAGTTGC CAATCTAGCA TTCGCATAGT 
GTACATCCCT GACGGCTGAA CAGCGTGCGG ATTTGGAATC ACCGAAAGCA 
CCCAGCCATT ATTATCTTTT TTGCTCTTCT GTAATATATA AGCAGCGTTC 
TTGTATGGAC GCGTTCAGGT GTTTGTTTCC ATTTGTTGAC AAAGATTTTA 
GATGTGGACG TGTGTTGATA GGGAATAGAC ATACATACGC GTGCGCGAGT 
GGGATCACCT GTTTTTTATT ACTTCCTTTG CAGCATAGTT GCAGCACGTT 
GTGTTTATCT GTTGACACGA TTTTCGTGAG TTATAAGATG ATTGATGTCC 
TCC

Gene models with high sequence identity

AT1G61250.1 [+] show detail - secretory carrier 3
E-value: 2e-94; Score: 119.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPanther	SECRETORY CARRIER MEMBRANE PROTEIN	3.5e-69
HMMPanther	SCAMP	3.5e-69
HMMPanther	SECRETORY CARRIER MEMBRANE PROTEIN	1e-98
HMMPanther	SCAMP	1e-98
HMMPfam	SCAMP	3.4e-11
HMMPfam	SCAMP	7.9e-36

See the detailed result >

AT1G61250.1

Model type: Protein coding
Short Description: secretory carrier 3
Curator Summary: Encodes a putative secretory carrier membrane protein (SC3).
Computational Description: secretory carrier 3 (SC3); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G11180.1); Has 696 Blast hits to 694 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 14; Plants - 228; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Link: InterPro Scan - TAIR