K32639

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32639

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K32639

Determination of introduced cDNA(s)

  • J023077E22 - Rice Full-length cDNAs - Original: J023077E22

    full reading [+] show sequence

    Nucleotide sequence: J023077E22 - full reading 
    GTTTATCTAC CGCCTCCTCT CACCACCACC GCCTCCTCCT CCTCCTCCGC 
    CTTCCGCCTC TCACCACCAC GGCTTCCAGC TCTGGCCGTA GCAGCAGCAG 
    CGCGCGCGCG GGTGCCTGTG CCCGCCGCTG CTCACGGCTC CTCGCCGCCG 
    GCTTGTGCCT CCGATACGTG AGCTCCCCAC GGGGGTGCGA GGGGGTCTGG 
    AAACCGGCGG ATCTCGGCCG CTCGCCGCCG GAGTCCGGCA CGGGTGGAGG 
    AGTACGGCGA CCCGCTTTTT TCTTAGCGAT TTTCTTTCCT CTTCTCTCAG 
    GCTGAGCTCC CCAAGCGCCG TGAATTGGTA GGACTTTTGT GGGAGGCGCT 
    GGTTTCTGCT CTACTCACAG CAAGTTTCTA AAGACTCGGA AGCAATTGAT 
    TGTGAAGTAT TCCTTTCAGT TCGGCTTGAA GTAGTCCTCT CAGACCATTG 
    CCGCATATAA GAGTAGCTTA TTACCTTGTA TAGGAAAAAG TAGAAAGCTT 
    ATTCCGAGCA TGTCTTGTTC ATAATAGACT GGACTCTTTG ATTCCTGTGT 
    GTTTCTGGCA GATCCAAGTA GCTGACTGGG TGCAGCATAT GCTTTTTCTA 
    ACGTTGGGCG TATGATGCAC CCCACAATCT GTGAACTATC CCTAGTCACT 
    CAGATCAACG GCGCATTATC TCTCTTCCAA TCTGGTTGAT GGGTAGCGCC 
    TGCGAAGCTG GTACGGACGA GCCTTCCCGA GACGATGTTA AGGGGACAGG 
    GAATGGCATC CTGGAGAATG GTCATAGTCA CAAGCCAGAG GAGGAGGAAT 
    GGAGGAATGG CATGGGAGAG GACTTACCCA ATGGGCACAG TACACCACCA 
    GAGCCCCAGC AAACAGATGA ACAGAAGGAG CACCAAGTGC AGATTGTCCG 
    GTGGGAGAGG TTCCTCCCTG TGAAGACACT GAGGGTCTTG CTGGTGGAGA 
    ATGATGACTC TACCCGTCAG GTGGTCAGCG CACTGCTTCG TAAGTGTTGT 
    TATGAAGTTA TCCCTGCTGA AAATGGGCTA CATGCATGGC AATGTCTTGA 
    AGATCTGCAA AACCACATTG ACCTTGTATT GACCGAGGTC GTAATGCCAC 
    GTCTGTCTGG CATTGGTCTG CTTAGTAAGA TCACAAGCCA CAAAATTTGC 
    AAGGATATTC CCGTGATTAT GATGTCTTCG AATGACTCAA TGGGTACAGT 
    CTTTAAGTGT TTGTCAAAAG GAGCAGTTGA CTTTCTAGTG GAGCCTATAC 
    GTAAGAATGA ACTTAAGAAC CTTTGGCAGC ATGTTTGGAG ACGATGCCAC 
    AGTTCCAGTG GCAGTGGAAG CGAAAGTGGC ATCCGAACAC AAAAGTGTAC 
    CAAACCAAAG GTTGATGATG AATATGAGAA TAACAGCGGT AGCAATAATG 
    ACAACGAGGA TGATGATGAC AATGATGAAG ATGATGACGA CTTAAGTGTT 
    GGACACAACG CTAGGGATGG CAGTGATAAT GGCAGTGGCA CTCAAAGTTC 
    ATGGACAAAG CGTGCAGTGG TGATTGACAG CCCACAACAA ATGTCTCCTG 
    ATCAACCATC CGATCTACCA GATAGTACTT GTGCGCAAGT AATTCACCCC 
    ACATCAGAGA TATGCAGCAA CAGGTGGTTA CCGACTGCAA ATAAAAGGAG 
    CGGAAAGAAA CATAAAGAAA ATAACGATGA CTCCATGGGG AAGTACTTAG 
    AAATAGGAGC TCCTAGAAAT TCTAGTATGG AGTACCAATC TTCTCCAAGA 
    GAGATGTCCG TTAATCCAAC AGAAAAACAG CATGAAACTC TCATGCCCCA 
    AAGTAAAACA ACAAGAGAAA CAGATAGTAG GAACACACAG AATGAACCAA 
    CTACTCAAAC TGTTGATTTA ATTAGTTCAA TAGCCAGAAG CACAGATGAC 
    AAACAAGTAG TTAGAATCAA TAATGCTCCT GATTGCTCCT CCAAGGTTCC 
    AGATGGAAAT GATAAAAATC GTGATTCTCT CATTGATATG ACATCTGAAG 
    AGTTGGGTTT GAAGAGATTG AAAACAACTG GATCTGCAAC TGAAATCCAT 
    GATGAACGAA ATATTCTGAA AAGATCAGAT CTCTCAGCTT TCACCAGGTA 
    CCATACAACT GTGGCTTCTA ATCAAGGTGG AGCTGGATTT GGGGGAAGCT 
    GTTCACCTCA AGATAACAGT TCAGAGGCTC TGAAAACAGA CTCCAACTGC 
    AAGGTGAAGT CAAATTCAGA TGCTGCTGAA ATAAAGCAAG GCTCCAATGG 
    TAGTAGCAAC AACAATGACA TGGGCTCCAG TACTAAGAAT GCCATCACAA 
    AACCTTCTTC AAACAGGGGA AAAGTGATAT CACCATCAGC TGTCAAAGCT 
    ACCCAACATA CATCAGCATT CCATCCTGTG CAGCGTCAAA CGTCACCTGC 
    TAATGTTGTA GGGAAAGACA AAGTTGATGA AGGAATTGCT AATGGAGTTA 
    ATGTGGGCCA CCCTGTAGAT GTACAAAATA GCTTTATGCA GCACCATCAT 
    CATGTTCATT ACTACGTCCA TGTTATGACA CAGCAGCAGC AGCAGCCATC 
    CATTGAGCGA GGATCATCAG ATGCTCAGTG TGGTTCATCC AATGTATTTG 
    ATCCTCCCAT TGAAGGTCAT GCGGCAAACT ATAGTGTGAA CGGGAGCTTT 
    TCAGGTGGCC ATAATGGAAA CAATGGGCAA AGAGGACCTA GTACTGCTCC 
    CAATGTTGGG AGGCCAAACA TGGAGACTGT TAATGGTATC GTGGATGAAA 
    ATGGGGCTGG AGGTGGCAAT GGAAGTGGGA GCGGTAGTGG TAATGACTTG 
    TATCAGAATG GGGTCTGTTA CCGAGAAGCT GCATTGAACA AATTCAGACA 
    GAAACGGAAA GTGAGGAACT TTGGAAAAAA GGTAGCCTGT TTTCAGTTAC 
    ACGCCTATCA AAGTCATGAG TCCTAAAATT AGTAGTATTA ATCACTTGAA 
    CTCTTTGAGG GGGCTATGAA TTCTACTCAG TATAGCAAAA ACGAGTGGTA 
    GTATATTCTA ATGATTGGGT AAACAAAATG ACAATTGATA CAATTTCTTC 
    GTACGGATGT GAACACTACT TTTGAAAAGA GTATAAAAAA GTGTTGTTTC 
    TTCCAAGGGT GGGCCAAACT TTAATAAGTA CCAGGATCGA ACCAGTGAAT 
    TACTACATTC CACAAAGTAA TTCATAATGT CTAATGAGGG GAGTATGATC 
    TTTAGGCAAT AATCGGTTTT GACACTGTTG TTTCACTTTT GAGGAAAAAG 
    ACACTTTTTT CTTGCTGTTG TGCCTGACTA AGGTTAGCAT TGAACCGGTA 
    TCTTTCTGAT GGCTTTGTCC GCCTATTTTC AGGTGCGCTA TCAGAGCAGA 
    AAGAGGTTGG CTGAGCAGCG CCCTCGGATC CGCGGGCAAT TCGTGCGACA 
    ATCTGGACAG GAAGATCAGG CAGGCCAAGA CGAAGACAGA TAACTAAGAA 
    CCACCTACAT ATCCAACATG GCATCTGCTT TGACAGCTGG AGAGCTACGC 
    AATTCATTCC ATAGCTGAAA GCAGCTCATC GATCCCCACA TTGGAGTGCT 
    CAATAAATAA AACCCATATG ATTATTTTCT GTGCCTGACT CCAGATGAAA 
    TTTGTGCTAT GGAGTGGACC ACGCATTTAA TTTTAATATG GCAATCGGTA 
    ACAACTTAGA TGCGATGGTT ATTTGTGACC TCCAGTTCCC TTGCAGAGAT 
    CCACTTGGAC ACTTTGTCGA GTCTAAGGAG GAGCAAACCA TCTGACGTTT 
    CTATCGGATC ATGAATGCTA AATCTTTACT CTACTACTAC ATCGAGCTGA 
    CATCAGTGAG GGTTCAACTA TTCATTGCGA GACATTATTT TCAAGTCAAA 
    TAGTACATAC TTTTCTGCTG GCTGC

    Gene models with high sequence identity

    1. AT5G02810.1 [+] show detail - pseudo-response regulator 7
      E-value: 3e-94; Score: 344.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Signal transduction response regulator, receiver domain 8.1e-23
    Gene3D no description 2.7e-25
    HMMPanther SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) 7.3e-16
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 7.3e-16
    superfamily CheY-like 1e-30
    ProfileScan Signal transduction response regulator, receiver domain 27.789
    HMMPfam Signal transduction response regulator, receiver domain 3.6e-20

    See the detailed result >

    AT5G02810.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 7
    Curator Summary
    PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 7 (PRR7); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR