K32702

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32702

Determination of introduced cDNA(s)

J023083A08 - Rice Full-length cDNAs - Original: J023083A08

full reading [+] show sequence

GAGGGGCTCT TCTCCCTCGC CCAGCCCAGG GCGTACGTCG CGCTCAACGA 
CCCCGCCGCC GCCGAGGCCG ACATCACCGC GCTCGTCGAC GCCATCGCGC 
TCGGCCTCTT CTGCGTCGTT GCCACGCTCG GCGCCGTGCC CGTCATCAGG 
TGCGCTGGCG GCGGGCCGGC GGAGATGGTC GCCGCCGCGC TTGACGCCCG 
CCTCCGCGAT CACCTCATCG CCAAGCCCAA TCTCTTCACT GAGGCCGCGT 
CCACAGCAGT TGCATCCTTC CAGCGGCCAC TCCTGTGCCT GTTTGATAGG 
AATTTCGAGC TTTCGGTGGG GATCCAGCAT GATTGGAGCT ACCGCCCGTT 
GGTCCACGAC GTGCTCGGCC TGAAGTCGAA CAAATTGAAG TTGCCAGAGA 
AGTATGATTT GGATGACACT GATCCGTTCT GGGTGGCAAA CAGCTGGTTG 
CAATTCCCCA AAGTGGCAGA GGAAATTGAG GCCCAGCTTG CCAAGTACAA 
GCAGGATGTG GATGAGGTGA ACCAGCGCAC AGGTGGTGGC AGGGATGGTG 
TTGAGTTTGA TGGCACCGAT CTCATTGGCA ACACCAGGCA TCTCATGAAT 
GCTGTGAACT CGCTCCCAGA ATTGACGGAA CGGAAGAAGA TGATTGACAA 
GCACACGAAT ATTGCAACGG CGCTGCTTGG CCATATCAAG GGGAGGTCTC 
TGGATGGATA TTTCGAGTGT GAGAATAGTA TGCTCGTGGA TGGCACCTTG 
GACCGGACCA AGTTGATGAA CCTGCTGAGA GGGAACGGCA CCAAGGAGGA 
TAAGCTCCGA CTGGCTGTGA CCTACCTGCT TTCCTTCGAG ACACCAGTGC 
CATCTGACTT AGAGCAGGTT GAGGCCGCTC TGCGTGAGTC AGAAGTGGAC 
ATGTCCGCGT TTCAGTATGT AAAGAGAATA AAGTCACTGA ATTCCCAGTT 
CGCTGGTGCA TCAAACACCG CAAGCAAGGT TAACATAGTT GATTGGGCAG 
AAAAGCTTTA TGGGCACTCC ATTAGTGCCA TGACAGGTGT GAGGAATTTG 
TTATCAGATG GAAAGCAGCT GGCCGCTACA AGGGCTGTAG AAGCTTTGAT 
GGAGGGGAAA CCAAATCCTG AAGTTGACAA CTACTTACTA TTTGATCCAC 
GGGCCCCTAA ATCAGGAACT GCTGGACAGT TCAGAGGACC CTTCAGAGAG 
GCCATTGTTT TCATGATTGG TGGTGGAAAT TACATTGAAT ACAGGAGCTT 
GACAGAGCTA ACGCAACGTT CACAGACTAC CAAGCAAGTC ATATATGGAG 
CAACTGAAAT TCTTAATGGG GTGGAGTTTA TTCAGCAACT CTCAGAACTG 
GGGCAGAAAG CAGGGTTGGG TGGTGTCAGC AGCAGCCTGC CACCCCAGTA 
AACAGGCTCC TTCAAGATAT TTTGATGTTA ATGGGTGTTT AAAGCTTCCT 
AGATCAGTGG TATCTTACCA GACTTTTGAT GTTAAAGAGT GGTCCAGACT 
GCATAGATCA ATGGTATCCA ATTTCCAAAA AGCTCAGGTT TATGGCCTTG 
CTTTGAATGT CATCTATACA AAGTTTTCTT ATGATTTT

Gene models with high sequence identity

AT2G17980.1 [+] show detail - Sec1/munc18-like (SM) proteins superfamily
E-value: 2e-166; Score: 582.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SLY1-RELATED	3.9e-187
HMMPanther	Sec1-like protein	3.9e-187
Coil	coiled-coil	0
Gene3D	no description	3e-61
HMMPfam	Sec1-like protein	5.7e-92
superfamily	Sec1-like protein	1.4e-101

See the detailed result >

AT2G17980.1

Model type: Protein coding
Short Description: Sec1/munc18-like (SM) proteins superfamily
Curator Summary: member of SLY1 Gene Family
Computational Description: ATSLY1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G31740.1); Has 1583 Blast hits to 1569 proteins in 233 species: Archae - 0; Bacteria - 15; Metazoa - 661; Fungi - 409; Plants - 204; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
Link: InterPro Scan - TAIR