K32723

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32723

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32723

Determination of introduced cDNA(s)

  • J013116J15 - Rice Full-length cDNAs - Original: J013116J15

    full reading [+] show sequence

    Nucleotide sequence: J013116J15 - full reading 
    GATTTTTGAC CCCTTTTTGT TACTCTCTTG AAGTTTTGAT TTGATCCGCT 
    CGGAAATTTG ATCTTCTTTT GTGTTCGGAA CTCGGATTTT TGAGGGGGTT 
    TTGGTCTTGG CGGCTGCTTG GGGTGTGAGA TCCCTCAAGC TGGCGAAGCG 
    AATCAGCCGT GTCCATGGAG ATGCACGCGA GCTCTGTCTC TTCCCATGGC 
    GAGGCCCGGC TCGGCGGCGA GCGGGGGCTC GTGGACCGGG AGGAGCTGGT 
    GCGCGTCATC GCGCAGTCGC TCTACTCGCT CGGTTACCGG AGGGCGGCCG 
    CGGCGCTGGA GGCGGAGTCC GGCATGCCGC TGTACCCGGC GGAGCACGAC 
    CGCCTCCTGT TCGACGTAAT GTCTGGCCGG TGGGACGCGT GCGTGGCGGC 
    GATCCGCGCC GTGGCGGGCC TCGGGGACCG GGAGCGCGCG GCGGCGGAGT 
    TCTTGGTGTG GAGGGGGCAC TTCCTGGAGC TTCTGGGGAT CGGCGACGCT 
    GGGCTGCCGC GCGCCAGGGA GGTGCTCTGG CGCCGGATTG CGCCCCTCGG 
    CGTTGACAGG GAGTGTGTGC ACTGGCTGGC ACGCGCAATG GTCTCGTGCG 
    AGGGGGCGGT CGCGCCGGAT GCCGTGGTCG GGTGGAGGAT TGGGCTTTTC 
    TTGGATCTGG TTGATGCTTT CCCGCCATGG TTCCATGTGC CAAGCGGTCG 
    GCTAGAGCTT CTGGTGGAGA ATGCAGTTGT TAAGCAGGTT TCGTCTTGTG 
    TATATCACAA TTTACCGGAC GAGGTCACTT TGTTTGAGGA TCATAAGTGC 
    CCTGAAGAGC AGATTCCTTC CAAGTGTTCG CAGGGATCTA TAGCACTAGA 
    CAAGTTTCAT GCTTGGGGGC GGGGACTATA GTCCGAAGAT GGATATTTGA 
    CACATCCATG CCTGTTTGCA GATATTATGT GGTCATAACA ATGAAGTTTG 
    GTTTGTAAGG TTCTCAAATG ATGGAAACTA TCTGGCATCA TCTTCAAGTG 
    ATTGCACGGC CATCATATGG AAGGTGGAAG AGGATGATAC ATTAACCAAG 
    AAGCACTGCC TCGTGGGTCA CAAAAATCCA ATTTCTTTTG TTGCCTGGAG 
    CCCAAATGAC AGAATGCTGC TCACTTGTGG TAATGGAGAA TCAGTAAAAC 
    TGTGGAACGT TGCTACTGGT GAATGCAGTC TTAAATTTAG CAGCTCAGTT 
    GGCCATATTA TCAATTCATG TGCATGGTTC CCTAATTCGG AGAAAATAGT 
    ATGTGCCAGC TGTGAGCCTG AAAGTTCTCC AAAGAGGATC TTCACTTGTG 
    ACCTAGAAGG TCAAGAACTG GAATCATGGG TTGGAGATAG AATACCTAAA 
    GTCAGTGATA TAGCTGTGAC TCCTGATAGC AAACATCTTA TCTGTGTATG 
    TTCCAATGAA ATTTGGATTC GAGAACTTCC AAAGGGGCGG GAATGGAGAA 
    TACGTGAGCA GCAGACGATT TCGTCGCTAT CTCTCTCTGG TGATGGACAA 
    TCACTGATTG TCAACCTCAA CAGCCAGGAA ATTCATTTGT GGAGAATCAG 
    TGAAAGTTCT ACTGCGGCGG ATAATAAATT CAAGGGACAC AAGCAAGGAA 
    AGTTTGTGAT TAGATCTTGC TTTGGTGGAT CAAACTCTCT GTTCATAGCT 
    AGTGGCAGTG AGGATTCCCA GGTCTACATT TGGAAAAGGC ACCTGGAGAC 
    GCCAATAAAG GTCTTATACG GTCATTCACT TACTGTAAAT TGTGTGAGCT 
    GGAATCCTGC TAAGCCACAT ATGCTGGCTT CGGCAAGTGA TGACCGCACA 
    GTTCGGATTT GGCTAGCACA CAAAGGCTCA CATCGCACAC GGTTGACGGC 
    TTGATGTGGA AAGTTTTGTA TGTTTTCCTT GTAAATATAT AGTTGTACAT 
    CTTGACTGTA GTAGTGTAGT GTGCACAGAG CAGTTGAGAT TTTTTTTCCC 
    CGTAGAGCTT TTAGCTACTT CAGAGGTAAA CTTTGAACAG GCAGAGGCCC 
    AGAAGTAGCA GTATACTTCA TATATATGCC TGTCTCGGAT TAAAGTTTTG 
    CTCGTCTACT CTGTAAAGAA TCAAAGATGC ATCAGAATTC AGAACCTTGT 
    ATATTTTTGT GAGTTGCTAC TCATTGGTAT TGATATGTCT GGATGACTGG 
    ATGG

    Gene models with high sequence identity

    1. AT5G43920.1 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 1e-117; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40-repeat-containing domain 0
    Gene3D WD40/YVTN repeat-like-containing domain 7.40000780398385e-50
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    superfamily WD40 repeat-like-containing domain 4.2e-53
    HMMSmart WD40 repeat 3.79999862644791e-08
    HMMSmart WD40 repeat 4.79999776836274e-08
    HMMSmart WD40 repeat 220.000021756082
    HMMSmart WD40 repeat 230.000061930565
    HMMSmart WD40 repeat 66.0000033689451
    HMMSmart WD40 repeat 0.180000001062787
    HMMSmart WD40 repeat 4.39999967439747e-09
    HMMPanther PTHR22838 1.9000069431527e-99
    HMMPfam WD40 repeat, subgroup 1.2e-07
    HMMPfam WD40 repeat, subgroup 0.00051
    HMMPfam WD40 repeat, subgroup 700
    HMMPfam WD40 repeat, subgroup 15
    HMMPfam WD40 repeat, subgroup 3.1e-10
    ProfileScan LisH dimerisation motif 8.45
    HMMPanther WD REPEAT PROTEIN 26-RELATED 3.1e-09

    See the detailed result >

    AT5G43920.1

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR