K32724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32724

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32724

Determination of introduced cDNA(s)

  • J033036D04 - Rice Full-length cDNAs - Original: J033036D04

    full reading [+] show sequence

    Nucleotide sequence: J033036D04 - full reading 
    GGCCCGCCGC CTCGCACATA CTACAGGAAG GAAGGACACA GCCAGCCCAC 
    GCAGGCCCGC CGCCGCCGCC GACATGGACC CTTCGGCGCC GTCCGGTAGC 
    TCCGCCGACG CCTCGGCGTC CTCCTCTTCT TCCGCCGTAG AGGACCTCGC 
    CCCGGGCATG GCGGCCATGA GCCTCCAAGA CCGGTTCGAG TTGCTGCGGG 
    GCATCGGCGA GGAGTGTATC CAGGAGGACG AGCTCATGAA TCTGCTGCAG 
    AAAAAGCCCG TCCCCATCTG CTACGACGGA TTTGAGCCCT CCGGCCGCAT 
    GCACATTGCC CAGGGCATTG TGAAGACAAT CAATGTTAAC AAGATGGTCA 
    GGGCTGGATG CAAAGTAAAA ATTTGGATAG CAGACTGGTT TGCTCAGCTC 
    AACAATAAGA TGGGGGGTGA TCTAAAAAAA ATCCAGACTG TTGGACGGTA 
    CATGATTGAG ATTTGGAGAG CAGCTGGTAT GAATCTTGAT GGTGTGGAAT 
    TCTTGTGGTC CTCAGAAGAA ATCAATAATC GTGCAAATGA ATATTGGCCA 
    CTTGTAATGG ACATTGCCTG TAAAAATAAT GTCAAAAGAA TAATGAGGTA 
    ACCACATTTG GATTGCATAT GTTCGTCTAA TGGCTTCTTC ACTTCCAAAG 
    CCTGAAGTGT AACTGCAATT TTATAACTTG CAAGTGAGTA TATATTTTTG 
    GCTCACAGAT GTTGTCAGAT TATGGGTCGA AATGATTCGG ATGAGTTGAC 
    AGCTGCCCAA ATATTCTATC CTTGTATGCA GTGTGCTGAT ATATTTTTCT 
    TGAAGGCAGA CATTTGCCAG TTGGGCATGG ACCAAAGGAA GGTTAATGTG 
    CTAGCCAGGG AGTACTGTAC CGACATCAAA AGGAAAAACA AACCGATTAT 
    TTTGTCACAT CGTATCCTAA TCTGCCCTTG CATGTTGATT AAACCTTTAT 
    CTTCTGTAAT TAAACAGCGC GGGACACTTT TCTTTTGGTC TGTCAAATTA 
    ATTGGGATGC TAAGCCTTCT TTCTGAAAAA AAAAAAACAT TGTCAAAAAT 
    TGTATTACTC CCTTAACGTG AATTGCAGAC ATGCTCCCTG GTTTTAAGGA 
    GGGCCAGGAA AAGATGTCAA AGAGTGATCC ATCCTCAGCC ATTTTTATGG 
    AAGATGACGA GGTTTTCCTG TTATTCAAGT ATCAATTTCT ATAACTTCTG 
    AACCTTGTGA CACCCACTAT TGTAATATAA AAGAACATAT TTATTACGCG 
    GTATGCCTTT CATAACACAA GTTTAGGCAG CAAGGGCTGT CCAATAGTAG 
    TGTATCCTTC TGTTTTCAGT GTTGGATAAC TGCTGAAAGT TCACTAACTT 
    GGATGAAAGA AAGTACTAAC TGATAAGTGA GATAGGAACA ACTAAAGGTG 
    ACCCCATTGA CTATGCTTTG TGAAAAAAAA AAAACTGTGC CTTTACTCGG 
    GACCATCCCA ATCTTTGGGC AAGCTAGACC CTTCCTAAGA AATAGTGGAA 
    TGTTTTAAGG GTATTTACCT AGGAGAGGTC ATCATCTAAG TGCTATAATT 
    TTATGTTTTT TCTGGTGATT TTACTTTGGT TTTAGTTTCC TGATGCGGGT 
    TGATAGACAC CTATGTTGTT TTGAATGGCT ACTATGGCAA CCTTACATGC 
    TGATTTGCAG TTTTTCTTTT CCTTTTGCTT ATTCTAGTGG ATAAATAAAA 
    TTCTCATTTA CTCCCTCCTT CCCAAATTGA TCATCATATA GTGGAACTCA 
    AAATTTCTCA AATTGATCAT CATATAACCG CATGGACACG GATTTCATCA 
    TAATACAATT AGTGCAGCAT GGGAGAATGT GAGCATGCTA ATGTGTAATT 
    GGCATGGTGT TTTAATCGAT GCATGTATTG TGGGAGAATG TGTGCATGAT 
    GTCCTGATTG ATGTGATTTA AATTATCCTT GGTCTTGGTG TATAAACATA 
    TATGATGATC AATTTAGGAA GATGGGAGTA TGTTTCTACA ATTTGCTAAT 
    TCTTTTCTTT TTGGTCTTCT ATAGCAGCTT CTGTTATGTA CTTGTAATCA 
    GAGCATGTAT TCATCACTAC CCAAACTAGT TCTAAATTTA TTCATGGCTT 
    AATTTATTGC AGGCTCAGGT AAATTTGAAG ATAAAACAAG CATTTTGCCC 
    TCCCAACGTG GTTGATGGGA ACCCATGCTT GGAGTACATC AAGTATATTG 
    TTTTCCCTTG GTTTGAAATG TTTGAGGTGG TTCGGAAGGA AGCAAATGGC 
    GGTAACAAGA CATTTACAAA CATGGATGAA CTCATCGATG ATTATAAGAC 
    TGGTGCTTTG CATCCTGCTG ATGTTAAGCC AGCTCTAGCA AAAGCAATAA 
    ACCAAATATT GCAGCCTATT CGTGACCACT TCAATAACAA CAGTGAAGCA 
    AAGATTCTGC TTAACACTGT TAAGAAGTAC AGAGTAACCA ACTAAGGAGG 
    AAACTAGTTC AAGCATCTTT GTCCTATTGA TCTACCTGGA TATTTTCTAT 
    GGCTACTTTG GAACCATATG AACCTAATAT TTAATGGAGG AATTTTGTTT 
    GCCATTTTTT TGTTTTTGTT TTTTTATGTA CTGAGTTGCA GAGCAACCAT 
    TGCATGGTAC TGCACAAACT TTGTTTAGAT TATTAGTTGT CAGATACCCA 
    ATCTCGTTTT ATCAGTATGG TGCAATGAAT GTTCATGATC ACCTTAATGT 
    TATAGATTTG ACAAGACAAA AGTCGAGTGC AAAGTGCAAA CATATGGTGG 
    AAATGCATTT GATTTTATTC CT

    Gene models with high sequence identity

    1. AT2G33840.1 [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
      E-value: 4e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:1.10.240.10 1.79999754022375e-31
    superfamily SSF52374 1.20000117458134e-23
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 3.2e-05
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 2.39999798157265e-21
    HMMPanther PTHR11946 2.39999798157265e-21
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 2.2e-17
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 4.2e-15
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 6.8e-56
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 6.8e-56
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 1.2e-32
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 1.2e-32
    superfamily Nucleotidylyl transferase 1.3e-29
    superfamily Nucleotidylyl transferase 3.9e-15
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.7e-37
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.9e-18

    See the detailed result >

    AT2G33840.1

    Model type
    Protein coding
    Short Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    Computational Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT1G28350.1); Has 5443 Blast hits to 5419 proteins in 1791 species: Archae - 389; Bacteria - 3121; Metazoa - 323; Fungi - 286; Plants - 124; Viruses - 5; Other Eukaryotes - 1195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR