K32724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32724

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32724

Determination of introduced cDNA(s)

  • J033036D04 - Rice Full-length cDNAs - Original: J033036D04

    full reading [+] show sequence

    Nucleotide sequence: J033036D04 - full reading
    GGCCCGCCGC CTCGCACATA CTACAGGAAG GAAGGACACA GCCAGCCCAC 
    GCAGGCCCGC CGCCGCCGCC GACATGGACC CTTCGGCGCC GTCCGGTAGC
    TCCGCCGACG CCTCGGCGTC CTCCTCTTCT TCCGCCGTAG AGGACCTCGC
    CCCGGGCATG GCGGCCATGA GCCTCCAAGA CCGGTTCGAG TTGCTGCGGG
    GCATCGGCGA GGAGTGTATC CAGGAGGACG AGCTCATGAA TCTGCTGCAG
    AAAAAGCCCG TCCCCATCTG CTACGACGGA TTTGAGCCCT CCGGCCGCAT
    GCACATTGCC CAGGGCATTG TGAAGACAAT CAATGTTAAC AAGATGGTCA
    GGGCTGGATG CAAAGTAAAA ATTTGGATAG CAGACTGGTT TGCTCAGCTC
    AACAATAAGA TGGGGGGTGA TCTAAAAAAA ATCCAGACTG TTGGACGGTA
    CATGATTGAG ATTTGGAGAG CAGCTGGTAT GAATCTTGAT GGTGTGGAAT
    TCTTGTGGTC CTCAGAAGAA ATCAATAATC GTGCAAATGA ATATTGGCCA
    CTTGTAATGG ACATTGCCTG TAAAAATAAT GTCAAAAGAA TAATGAGGTA
    ACCACATTTG GATTGCATAT GTTCGTCTAA TGGCTTCTTC ACTTCCAAAG
    CCTGAAGTGT AACTGCAATT TTATAACTTG CAAGTGAGTA TATATTTTTG
    GCTCACAGAT GTTGTCAGAT TATGGGTCGA AATGATTCGG ATGAGTTGAC
    AGCTGCCCAA ATATTCTATC CTTGTATGCA GTGTGCTGAT ATATTTTTCT
    TGAAGGCAGA CATTTGCCAG TTGGGCATGG ACCAAAGGAA GGTTAATGTG
    CTAGCCAGGG AGTACTGTAC CGACATCAAA AGGAAAAACA AACCGATTAT
    TTTGTCACAT CGTATCCTAA TCTGCCCTTG CATGTTGATT AAACCTTTAT
    CTTCTGTAAT TAAACAGCGC GGGACACTTT TCTTTTGGTC TGTCAAATTA
    ATTGGGATGC TAAGCCTTCT TTCTGAAAAA AAAAAAACAT TGTCAAAAAT
    TGTATTACTC CCTTAACGTG AATTGCAGAC ATGCTCCCTG GTTTTAAGGA
    GGGCCAGGAA AAGATGTCAA AGAGTGATCC ATCCTCAGCC ATTTTTATGG
    AAGATGACGA GGTTTTCCTG TTATTCAAGT ATCAATTTCT ATAACTTCTG
    AACCTTGTGA CACCCACTAT TGTAATATAA AAGAACATAT TTATTACGCG
    GTATGCCTTT CATAACACAA GTTTAGGCAG CAAGGGCTGT CCAATAGTAG
    TGTATCCTTC TGTTTTCAGT GTTGGATAAC TGCTGAAAGT TCACTAACTT
    GGATGAAAGA AAGTACTAAC TGATAAGTGA GATAGGAACA ACTAAAGGTG
    ACCCCATTGA CTATGCTTTG TGAAAAAAAA AAAACTGTGC CTTTACTCGG
    GACCATCCCA ATCTTTGGGC AAGCTAGACC CTTCCTAAGA AATAGTGGAA
    TGTTTTAAGG GTATTTACCT AGGAGAGGTC ATCATCTAAG TGCTATAATT
    TTATGTTTTT TCTGGTGATT TTACTTTGGT TTTAGTTTCC TGATGCGGGT
    TGATAGACAC CTATGTTGTT TTGAATGGCT ACTATGGCAA CCTTACATGC
    TGATTTGCAG TTTTTCTTTT CCTTTTGCTT ATTCTAGTGG ATAAATAAAA
    TTCTCATTTA CTCCCTCCTT CCCAAATTGA TCATCATATA GTGGAACTCA
    AAATTTCTCA AATTGATCAT CATATAACCG CATGGACACG GATTTCATCA
    TAATACAATT AGTGCAGCAT GGGAGAATGT GAGCATGCTA ATGTGTAATT
    GGCATGGTGT TTTAATCGAT GCATGTATTG TGGGAGAATG TGTGCATGAT
    GTCCTGATTG ATGTGATTTA AATTATCCTT GGTCTTGGTG TATAAACATA
    TATGATGATC AATTTAGGAA GATGGGAGTA TGTTTCTACA ATTTGCTAAT
    TCTTTTCTTT TTGGTCTTCT ATAGCAGCTT CTGTTATGTA CTTGTAATCA
    GAGCATGTAT TCATCACTAC CCAAACTAGT TCTAAATTTA TTCATGGCTT
    AATTTATTGC AGGCTCAGGT AAATTTGAAG ATAAAACAAG CATTTTGCCC
    TCCCAACGTG GTTGATGGGA ACCCATGCTT GGAGTACATC AAGTATATTG
    TTTTCCCTTG GTTTGAAATG TTTGAGGTGG TTCGGAAGGA AGCAAATGGC
    GGTAACAAGA CATTTACAAA CATGGATGAA CTCATCGATG ATTATAAGAC
    TGGTGCTTTG CATCCTGCTG ATGTTAAGCC AGCTCTAGCA AAAGCAATAA
    ACCAAATATT GCAGCCTATT CGTGACCACT TCAATAACAA CAGTGAAGCA
    AAGATTCTGC TTAACACTGT TAAGAAGTAC AGAGTAACCA ACTAAGGAGG
    AAACTAGTTC AAGCATCTTT GTCCTATTGA TCTACCTGGA TATTTTCTAT
    GGCTACTTTG GAACCATATG AACCTAATAT TTAATGGAGG AATTTTGTTT
    GCCATTTTTT TGTTTTTGTT TTTTTATGTA CTGAGTTGCA GAGCAACCAT
    TGCATGGTAC TGCACAAACT TTGTTTAGAT TATTAGTTGT CAGATACCCA
    ATCTCGTTTT ATCAGTATGG TGCAATGAAT GTTCATGATC ACCTTAATGT
    TATAGATTTG ACAAGACAAA AGTCGAGTGC AAAGTGCAAA CATATGGTGG
    AAATGCATTT GATTTTATTC CT

    Gene models with high sequence identity

    1. AT2G33840.1 [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
      E-value: 4e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:1.10.240.10 1.79999754022375e-31
    superfamily SSF52374 1.20000117458134e-23
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 3.2e-05
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 2.39999798157265e-21
    HMMPanther PTHR11946 2.39999798157265e-21
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 2.2e-17
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 4.2e-15
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 6.8e-56
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 6.8e-56
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 1.2e-32
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 1.2e-32
    superfamily Nucleotidylyl transferase 1.3e-29
    superfamily Nucleotidylyl transferase 3.9e-15
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.7e-37
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.9e-18

    See the detailed result >

    AT2G33840.1

    Model type
    Protein coding
    Short Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    Computational Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT1G28350.1); Has 5443 Blast hits to 5419 proteins in 1791 species: Archae - 389; Bacteria - 3121; Metazoa - 323; Fungi - 286; Plants - 124; Viruses - 5; Other Eukaryotes - 1195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR