K32744

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32744

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32744

Determination of introduced cDNA(s)

  • J013111D09 - Rice Full-length cDNAs - Original: J013111D09

    full reading [+] show sequence

    Nucleotide sequence: J013111D09 - full reading 
    GATGAGCCTA TTTGGTTCTT GTTTTTACTA GTATAAGTGG TTGCTTAAGA 
    TCTAAAACTA TCCTTCCACC TAGACTACAT TAGCCTCTGC TAGCCTAATT 
    TGTCAAGAAG CCCTGCTTTT GCAGTTCACA TTCTTCCCAA GCCTTCCTAC 
    AGACTGCTGT TCAGACTTCA GTTCCATGGT TCAGATGTCT ATACAGAGGG 
    CTGCAACCAT TTCACCTCCT TGTTCCTTAT CCTTGCCATT TGATTGTGTG 
    AGTGGTACAA GTAGAAGATT TGCCTCATGT AGATCCCAGT ATTCATGCTT 
    TGCCTATAGT GAAAGACTAT CTCCAAATGT TTTGAAGACC AACAGTGTCG 
    TCGATCCCTC TGAACCGAAG ATTTTGGATG CGAGTTCTTC TGCTTCAAGA 
    ACTGGACAAT ATAGTGCAAC TACTCATCTA TCAGGTACAA TTGGAGTAAT 
    GGGAATATCT GCCTCTTCCT CTCTCAGATT CTTACAGAAG CTTGTGCATT 
    GGAGTACTCG TGATGGAGAA GAGGCACCTC CCTTTCTCGT GTGTAATGAT 
    CCACTTCTTA AGAAGGAGCT CATGTCATCT CAAAATTCAC AGCGCCCTTC 
    CGACTGTAAC ACTGCTCTTG GGAAGTTAAG GCTGAGGAGG CTCCTCTTGG 
    AGAAATCTGG AGTATGCTGC ATTGCCATGC CATGTAATAC CTTACATGCC 
    TACCATGATG AAATTTCACA AGGATGCTCT GTACCTTCCC TCCATATTGG 
    TGATTGTGTT GTAAAGGAAC TCAAATCGGC AAACTTAAAA CCTGTTGAAT 
    ATGGAAGTAA TGTTTGTGTC GGAATTCTAT GTACAGACAA TACATTGAAT 
    GCAAAGTGTT ATCTAAATAA GCTGGAGAGC CAGGGTTTTG AGGTGCTGCT 
    TCCAGATAAA GCTTCATTGG AGCACACGGT ATTACCAGCC ATCGGCGCTT 
    TTAGGAGAGG GGACATGGAA GGTGCAAGAA ATCTGTTGCG AATATCACTA 
    CAGGTTATGT TCGTGAGGGC TGTCAATACA ATAATCCTTG CATCTGATGA 
    CTTTGTTGGT ATATTACCTG ATGATGACCC ACTGCTCAAG AAATGCATAG 
    ACCCAATGGA TGCTTTGGTT AGAGAGACCA TCATGTGTGC AAGAACAGAT 
    AGCCTGAGAC CATGATATCC TTCAAAGTGA TGCTGGTTCC TTGTACAGTT 
    TGCAAGTAGT AGATGTTTTC ATTTTTTATC TCCAGCGAGC ACACATGTAA 
    ATTTTAGGAT CAGAGAAGAA TTCACTATTC ATCACAAGTC AATATCATTA 
    ATAGTACAGT GTATTATGCA GTGTGATCTG GGTATGCATT ATGCCTTGCT 
    GCTAAGTCAA GAAAGATGCC GAGTCCATCT GCGAGTTCAG ATTTTGTCAG 
    ATGTGTTTGT GGCCTGGCCA CACCAGGGAA AACTTCAAAC AAGAATCTAG 
    AAATCAAATA GATGATGTGG ATGTTTCTGT GGATCAGCCT GTAGATAGAA 
    CAAATGAAGA CATCGTCGAA TCTTAACTGC GCAGAAGGAG CACCTTTCTT 
    TTTCAGATAA GTAGCAACTG CCTTGACATC TGAGATCACA GTTATTCAGT 
    AACATCTCCC TCTTGTCAAA AATATATCCC CATCAGAAAG AATGCAGCCT 
    CATGCTCTTC CAAACACTTC TACAAGGCGT GTTCAGACTT CAGAGCCTGT 
    ATGGTAACAC AGTTATCAGA AAGTTATCAG TGTGTTTTTT TTTTTCAGAA 
    GTTGTAACAG AGATGATGCT TCCATTTTGA CTTGGGAAAG CCAATCTGAG 
    TGGGCCTGTT CACTGGTATT CCAAGAGAAT CTGGTGATTG GTGTGGAGGA 
    GGAGGGGGAG GGGCTTGAAT GTTCTGTGCA CAGGTGGGAT TGCAAAAGGT 
    GTGCACAATG AGTGAGCAAT GATTCAGGCT GTCTGCAGGG GCCTTCACCA 
    AACAAGTGGC TACCCTTTCT CCCATGCAGG AACCAGGGAC AAAAAGAAAG 
    GAAGCACAGG GGACAATGCA ACACCAATTG GGCCTTCCTC TCTCTGTTCT 
    TCAGGGTAAG CAAAGGCACC AATGCTTAAC CCAAGATTGA TCATATCAGA 
    CCCTGTGCTG GAGAAATAAA CAACTCCAGC ATCATGCTAT TGTGCTGTGA 
    TATATTTGTA TACATATTCA GATATGGCTT TGTTTTTTAA GTTCTTCGGT 
    CGTCGCGGTC GGGATATTTA TTCCATTATC ATAAGAAATA ATAACAATAC 
    TACATACATA TTC

    Gene models with high sequence identity

    1. AT1G15410.1 [+] show detail - aspartate-glutamate racemase family
      E-value: 1e-61; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Asp/Glu racemase 1.6e-16
    superfamily Asp/Glu racemase 5e-20
    superfamily Asp/Glu racemase 5.5e-17
    HMMPfam Asp/Glu/hydantoin racemase 1.1e-21

    See the detailed result >

    AT1G15410.1

    Model type
    Protein coding
    Short Description
    aspartate-glutamate racemase family
    Computational Description
    aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR