K32746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32746

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32746

Determination of introduced cDNA(s)

  • J013130F13 - Rice Full-length cDNAs - Original: J013130F13

    full reading [+] show sequence

    Nucleotide sequence: J013130F13 - full reading 
    GAGTGGCGTT CCACTGAACC AGGCCAAGCC AGACGGACAA GACTTCGCCG 
    CAGCCGCGTC CTCCTCACCG CGCCGCCGTC GCAATGGCTA CGGCCATCGC 
    AGCCTCCGCG TTCCTCTCCT CCGCCTTCGC CAGGGACAGG CCGCTCCCCC 
    GCCAGCGGCG CGCGGCGAGG CCCGCGACCC GCCGCGCCGC CGCGGGGGGC 
    CTGTCGGTGC GGTGCGAGCA GAGCGAGAAG CAGAAGAGGC AGCCGCTCTC 
    CGCGCTCGTC CCCCGCGAGC AGCGATTCAT GTTCGAAGGC GACGAGCTCT 
    GCGGCCCCGA CATATGGAAC ACAACATGGT ACCCTAAGGC TGCAGATCAT 
    GTAACTACTG AGAAGACATG GTATGTTGTT GATGCAACAG ACAAGATTCT 
    AGGTAGGCTT GCATCCACCA TTGCAGTACA CATCAGAGGA AAGAATGAGG 
    CCACATACAC TCCAAGTGTG GACATGGGGG CTTTTGTTGT TGTGGTTAAT 
    GCAGAGAAGG TTGCTGTTTC TGGCAAAAAG CGGTCACAGA AGCTCTACAG 
    GAGGCACTCT GGACGGCCTG GTGGAATGAA AGAAGAAACT TTTGATCAGC 
    TTCAGAAAAG GATTCCGGAG AGAATTATTG AACATGCAGT GCGTGGCATG 
    CTTCCTAAGG GCAGACTGGG AAGAAGACTG TTTACCCACC TCAAGGTGTA 
    CAAGGGAGCA GAACATCCCC ATGAGGCTCA AAAACCTGTT CCACTGCCTA 
    TCAAGGATAA AAGAATACAG AAGTCTGAGA AGTAGATAAT TCCTGTGGAG 
    ACTAAGAAAG ACACAACAAT CTCACGTAAA TTCCTCCCCT CGAGATTTTG 
    TCCAATCTTT GGAATGTGAT GCATCTGTCT GTTTGGGGAA TGGAGTGTAA 
    AATTTTTTGT AATTTACTTC CTCCAAAAGT TTGTGTTTCT AAGTCATAGT 
    TCTTGTTGAT TACATATCAT GTACCTAATA CCGTACGATT TTAAGCAATC 
    CGATATTTCC ATATCCG

    Gene models with high sequence identity

    1. AT1G78630.1 [+] show detail - Ribosomal protein L13 family protein
      E-value: 4e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L13 9.3e-46
    HMMPfam Ribosomal protein L13 1.4e-51
    PatternScan Ribosomal protein L13 0
    HMMTigr Ribosomal protein L13, bacterial-type 1.2e-82
    Gene3D Ribosomal protein L13 4e-41
    HMMPanther Ribosomal protein L13, bacterial-type 2.3e-81
    HMMPanther Ribosomal protein L13 2.3e-81

    See the detailed result >

    AT1G78630.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L13 family protein
    Computational Description
    embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR