K32805

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32805

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32805

Determination of introduced cDNA(s)

  • J023149O03 - Rice Full-length cDNAs - Original: J023149O03

    full reading [+] show sequence

    Nucleotide sequence: J023149O03 - full reading 
    GTCTCACCTC ACCATCATCT CTTCTCCTCG TGCTCGTCAC TCGCGAGCAA 
    ATACATCGCC ATCTCTCCTC CTCCTCCTTG TCGTCATAGT GCACGCAAAG 
    AAACACGGTT TGCAATGGCG TGGTGCTTGG TGTTCATGGT GTTCTTGATC 
    TACTGCCTCA TCTCGACTGT CGGGCTGCCG GTGGCGCCGG CCGACGAGGC 
    GGCGATGCAG CTGGGCGGCG TCGGCGGTGG GCGGCTCAGC GTGGAGCCGT 
    CTGATGTGAT GGAGGCGTCC CTTGACTTTG GGCGGCTCAC CAGCGCCGAG 
    CCGCTGGCCG TGTTCCACCC GCGCGGGGCC GGCGACGTCG CCGCGCTGGT 
    GAAGGCGGCG TACGGGTCGG CCAGCGGCAT CCGCGTCTCG GCGCGGGGGC 
    ACGGCCATTC CATCAGCGGG CAGGCCCAGG CGGCCGGCGG GGTGGTCGTG 
    GACATGAGTC ACGGGTGGCG CGCGGAGGCG GCGGAGAGGA CGTTGCCGGT 
    GTACTCGCCG GCGCTCGGCG GGCACTACAT CGACGTGTGG GGCGGCGAGC 
    TGTGGATCGA CGTGCTCAAC TGGACGCTGG AGCACGGCGG GCTCGCGCCG 
    CGCTCGTGGA CGGACTACCT CTACCTTTCC GTGGGCGGCA CCCTCTCCAA 
    CGCCGGTATA AGTGGGCAAG CTTTCCACCA CGGGCCCCAG ATCAGCAACG 
    TCTACGAGCT CGACGTCGTT ACCGGGAAAG GAGAGGTGGT GACCTGCTCG 
    GAGTCCAACA ACCCGGACCT CTTCTTCGGC GCGCTCGGCG GGCTCGGCCA 
    GCTCGGGATC ATCACGCGCG CGCGCATCGC CCTCGAGCCT GCTCCTCACA 
    GGGTTCGCTG GATCCGGGCG CTCTACTCCA ACTTCACCGA GTTCACCGCG 
    GACCAGGAGC GGCTCATCTC CCTGCAGCAC GGCGGCCGAC GGTTCGACTA 
    CGTGGAGGGC TTCGTCGTCG CCGCCGAGGG CCTAATCAAC AACTGGAGGT 
    CGTCCTTCTT CTCGCCGCAG AACCCGGTCA AGCTCAGCTC GCTCAAGCAC 
    AACTCCGGGG TTCTCTACTG CCTGGAGGTC ACCAAGAATT ACGACGACTC 
    CACCGCCGTA ACCGTCGACC AGGACGTGGA GGCGCTGCTG GGCGAGCTGA 
    ATTTCATCCC GGGCACGGTG TTCACGACGG ACCTGCCGTA CGTGGACTTC 
    CTAGACCGCG TGCACAAGGC GGAGCTGAAG CTCCGCGGCA AGGGCATGTG 
    GGAGGTCCCG CACCCGTGGC TCAACCTCTT CGTGCCGGCG TCCCGCATCG 
    CCGACTTCGA CCGCGGCGTC TTCCGCGGCG TCCTCGGCAG CCGCACCGCC 
    GGTGGCCCCA TCCTCATCTA CCCCATGAAC AGGCACAAGT GGGACCCGAG 
    GAGCTCGGTG GTGACGCCGG AGGAGGACGT GTTCTACCTG GTGGCGTTCC 
    TGCGGTCGGC GGTGCCGGGC TCGACCGACC CGGCGCAGAG CCTGGAGGCG 
    CTGGAGCGGC AGAACCGGGA GATCCTCGAG TTCTGCGACG AGGCCGGCAT 
    CGGGGCCAAG CAGTACCTGC CCAACCACAA GGCGCAGCGC GAGTGGGAGG 
    CCCATTTCGG AGCGAGGTGG GCTCGGTTCG CGCGGCTCAA GGCCGAGTTC 
    GACCCGCGGG CCATGCTCGC CACCGGCCAG GGAATCTTCG ACTCGCCGCC 
    GCTCTTGGCG GAGTCCTGAA ACGAAGACGA TCGACGAACA AGATGATGGC 
    TAGCTAGGCG CATGTAATTA GTAAGAATCA TAACAGGTGA TTAGTTAGTC 
    TTAATCTGAT GTGTAGATTC CTCGCCCCAT AAAAAAAAAT CTGATGTGTA 
    GACAATTCTG TACAGAGGGA TGTATCAGTT TCATGCAAAA TGTGTGCAAT 
    GTTTTTTTGC CGGTAAAAGT CGGCGTCTGC

    Gene models with high sequence identity

    1. AT1G75450.1 [+] show detail - cytokinin oxidase 5
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily FAD-linked oxidase-like, C-terminal 6.4e-89
    superfamily FAD-binding, type 2 4.8e-44
    HMMPfam Cytokinin dehydrogenase 1, FAD/cytokinin binding domain 2.8e-122
    HMMPfam FAD linked oxidase, N-terminal 9.1e-24
    HMMPanther GULONOLACTONE OXIDASE 5e-13
    ProfileScan FAD-binding, type 2 18.927
    PatternScan Oxygen oxidoreductase covalent FAD-binding site 0

    See the detailed result >

    AT1G75450.1

    Model type
    Protein coding
    Short Description
    cytokinin oxidase 5
    Curator Summary
    This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
    Computational Description
    cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6615 Blast hits to 6610 proteins in 1194 species: Archae - 154; Bacteria - 4290; Metazoa - 145; Fungi - 1218; Plants - 369; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR