K32810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32810

Determination of introduced cDNA(s)

  • J013158E09 - Rice Full-length cDNAs - Original: J013158E09

    full reading [+] show sequence

    Nucleotide sequence: J013158E09 - full reading 
    GACTACCCAT CACTCCCCCA AGATTCCACG GATATTTTCT CTCCCCCTGC 
    TCCCGTCGCC ATCGCAAAGG AGAAAAAAAA AAGGTGAGCA ATCGCTTCTC 
    TGCTCGCTCG GCTCAGATCT GCGTGTGTAC GCTGGTAGAT CTGTGGAAAG 
    AGGTTCAATT TTTTGAGCCC AGTTCGCGAT CTGCGGTTCC GCGAGAGTGA 
    ACGGATCTTC CGGATCGTGG AAATTCATCG TTTGCTTTTC TTTTTTTTTT 
    TTGTTTCTTC TTTGGATGTG TCTCCGATCT GAATCCGCTT GATCTGGACA 
    GAGGAGGAAG GAAGGAAGGA TGAGCGCCAC GGCGGTGTCG TCGCTGAACC 
    CGGACGCGCC GCTCTTCATC CCGGCGGCGT TCCGGCAGGT GGAGGACTTC 
    TCGCCGCAGT GGTGGGACCT CGTCAAGACC ACCGCCTGGT TCCGCGACCA 
    CTGGTTCCAC GAGCACCAGC AGCTCGACGA GATGGCCGAC TCCCTCGCCC 
    TCCACGACGC CGCCGCCGAC GACGACGACC TCGCCGGCCT CCTCCCCGAC 
    GACGCCTTCG ACGACGACGA CGACGACGAC CTCTTCTTCG ACCAGACCCA 
    TAACCTCCTC GTCGATCCCC CGCAGCCGCC CGCCGCTCTC AAGACTGGTA 
    CCGACTGACT CACTCGCTTG CTCGCTTTGT TGATCATCAA AAGATCGAGT 
    CTAAAACGAG AATTGCAGTG AAATTCATCG CCATGTCTCC CATGTGTGTG 
    TGCAGATGCG GTGCTCAAGG CGCTGAGCCT GGTGTCTCCC AAGGGCGGCG 
    ACGCGCCGCG GGGGCTCCGG GAGAAGCCCC GGCACTCCGA GAAGCCCACC 
    AAGTACGCCG GCAGCCCGAG GAGCGGCGGC GCTCCCCGCG TCATCCACCA 
    GCCTCGCTAG GCTGCGATGG CTAGGATGGC AAAAACTAAA GGATGTAGCA 
    AAAGCATTGC GTCTTTGCGC CGCGGTGTTT TGCTTTGCTT CCTTCCTCCC 
    GGCTGCTGCT GCTGGTGTGG TCTACTCAAA GTCTGGGTTT GTCCCTAGAG 
    TTTATCTAGG AATTTAGTTG TGTCCTTTTG TATAGTATAA ACCAAAATGA 
    CCCTAAAAAA AGTATGAACA AAATGCAACC TTTGTTCAGT GTTGCCTTGT 
    AAGTTTAATG TTCATCTAGA GTTCGTCTAG GAAAATTCCA AAAAGAAGAA 
    GTGGAAGAAG AATGTAGTAG TGTGCACTCC TGTTAATGTT CTGATGATGT 
    GCAATAGCAA GCAGCCTAAT GTTGAATATT CAGACTTTTC CC

    Gene models with high sequence identity

    1. AT2G41430.5 [+] show detail - dehydration-induced protein (ERD15)
      E-value: 3e-14; Score: 77.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G41430.5

    Model type
    Protein coding
    Short Description
    dehydration-induced protein (ERD15)
    Curator Summary
    Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to water deprivation, response to high light intensity, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2).
    Link
    InterPro Scan - TAIR