K32817

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32817

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32817

Determination of introduced cDNA(s)

J033135D01 - Rice Full-length cDNAs - Original: J033135D01

full reading [+] show sequence

GCCAAGGAGA GGGGCCACGC GCTCGCCCTC GCCCGCCGCG CGCGCCAGCC 
GCTCGAGTCC GTCATCGAGG TCAGCGACAT CGACGCCGTG CTCCAGCGCG 
CCGCAGAGGA ATACCTCCTC CTCGGTGGTG GTGGCGGCGA CGGTGCCGGC 
GACGTCGCCC TCTCCGCCTC GCTCGGCTCC GGGCTTATCG ATCTGGATGG 
GACGGTGGAG ACGGAGGAGG AGAGGCGGTG GCTGCGGGAG GAGCAGGAGG 
CCCTTCACGC GGGCAGCCTC AAGGTGCCCC GCCGACCGCC ATGGACTCCC 
CAGATGACGG TGGAGGAGCT CGACGCCAAC GAGAAGCGGG CCTTCCTGGA 
GTGGCGGAGG AACCTCGCAA GATTGGAAGA GAACGAAAAA CTTGTCCTTA 
CCCCTTTTGA GAAGAACATT GATATCTGGA GACAGCTCTG GAGAGTACTT 
GAACGCAGTG ATCTGCTGGT CATGGTAGTT GATGCTCGAG ATCCCTTGTT 
CTACCGCTGC CCTGATCTTG AGGTATACGC ACAGGAAATT GATGAGCACA 
AGAGAACACT GCTTCTTGTA AACAAGGCTG ATCTTTTACC ACTGAATGTC 
AGACAGAGAT GGGCAGAATA CTTTAAGCAA CACGATATCC TTTATCTGTT 
CTGGTCTGCC AAAGCTGCTA CTGCTGATTT AGAGGGAAAG AAGTTGAGCA 
GCTATTCCAT GGAAAACTGG AATACAGCAG ATCTTGACAC CAAGATATAT 
GGCCGGGATG AACTCTTGGT GAGATTGCAG GGTGAAGCTG AGTATATTGT 
GAACCAAAAG GGAGCATTAA GAGCTGAAGA GGGTCATGAA TCTAGTCGTT 
CAGATTCTGT CTCAACACGA CCCAAGCATG TGGTTGTTGG ATTTGTAGGC 
TATCCAAATG TTGGGAAGAG TTCAACCATC AATGCTTTGG TAGGCCAGAA 
GAGAACTGGT GTAACCTCTA CACCTGGCAA GACCAAGCAT TTTCAGACAT 
TGGTAATCTC AGAAGAACTC ATTCTCTGTG ATTGTCCAGG TCTGGTCTTC 
CCTTCCTTTT CAAGCTCAAG GCATGAGATG GTAGCCTGTG GTGTCTTGCC 
AATTGATAGG ATGACAAAGC ATAGGGGCGC TATTCAAGTG GTGGCAAATC 
GTGTGCCAAG AAATGTTCTA GAACAGATTT ATAAAATCAC CCTGCCAAAG 
CCCAAGGCAT ATGAACAACT GTCCCGACCA CCAACTGCCG CTGAGTTGCT 
GCGGGCGTAC TGCACATCTC GAGGGCATGT CAGTCATGCT GGGCTGCCTG 
ATGAGACTAG GGCTGCTAGA CAGATTCTGA AGGATTACTT AGATGGAAAG 
ATCCCACACT TTGAGCTTCC CCCTGGTGAT ACAGATTCTG AAACTGACCC 
AGAGGAAACC ACTGACCTTG AAGGCTCAGA TACTGCAGTA GGTGCCACAG 
CAGATCATTG TGCTTCTGAT GAACAAGATG GGGAAATCAG TCAAGCTGAT 
CCAAACATTA GTCATGTACT AAGTGACCTT GAATCTTTCG ACCTGGCCAG 
TGAAGTGTCC AAGAACTCTA CAAAGAAGAA GAAAGAGGCA TCCTATAAGC 
ATCACAAGAA ACCCCAGAGG AAGAAGGATC GTTCATGGAG GGTTGGAAAT 
GATGGCGCTG ATGGATCTGC TGTTGTTCGG GTGTTCCAGA AACCTGCCGT 
CAATTTTGCT ACCGTTACAG GTTAATGTTT TTTTGCGGCA CTCTGTGCGA 
CTTCATTCTC TTTTTTAGCT TACGGTAATT GAAGATGTCG TTGAAAGTCA 
AACTACATTT TATCCATTTT GTTTCATCTT CTGCTGTTTG TTATGGCCAT 
CTGTAATTCT GTATTGGAAA TTTGGAATGG TACGCAATGT GGCTATTTTT 
CGATGCT

Gene models with high sequence identity

AT1G08410.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 8e-170; Score: 594.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	1.1e-37
HMMPfam	GTP-binding protein, HSR1-related	1.5e-09
HMMPanther	GTP-BINDING PROTEIN-RELATED	1.7e-124
HMMPanther	GTP-BINDING PROTEIN-RELATED	1.7e-124
Gene3D	no description	7.5e-37
FPrintScan	GTP1/OBG	4.9e-06
FPrintScan	GTP1/OBG	4.9e-06

See the detailed result >

AT1G08410.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
Link: InterPro Scan - TAIR