K32828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32828

Determination of introduced cDNA(s)

  • J013107H17 - Rice Full-length cDNAs - Original: J013107H17

    full reading [+] show sequence

    Nucleotide sequence: J013107H17 - full reading 
    TTGACCATAT TTAGGTGGAT AAATCTCATC AGATCGAGCT AAGCTTGGAG 
    GCAAGCACAA ATGGAGCTCA CATGGCTTCT ACTCCTCGCT ACTCTCCTCC 
    TCTCCACCAC TCTCCTCGTC TTCCTCTTCC ATGGCGGTAG CAGCGCCACC 
    GGCGGCGAGA AGCGCCGCCG CCTGCCGCCG GGGCCGGCCA CCGTGCCGGT 
    GCTCGGCAAC CTGCTGTGGG CGACCAACTC CGGGATGGAC ATCATGCGCG 
    CCGTGCGCCG CCTCCACGCG CGCCATGGCC CGATGCTCGG CCTCCGCATG 
    GGCTCCCGGC TCGAGGTCAT CGTGGCGGAC CGGCGGCTCG CCCACGCCGC 
    GCTCGTCGAG AGCGGCGCCG CCATGGCCGA CCGCCCGGAG TTCGCGTCGC 
    GCGCGCTCCT CGGCCTCGAC ACCGCCACCA TCTCCAACTC CAGCTACGGC 
    CCGCTCTGGC GCCTCTTCCG CCGCAACTTC GTCGCCGAGG TCGCGCACCC 
    GGCTCGCCTC CGGCAGTTCG CGCCGGCGAG GGCGGCGGTG CTCGAAGAGC 
    TCACGGACAA GCTGCGTCGC CGGCAGGAGG ACGCCGGCGC GGGCACCATC 
    CTGGAGACGT TCCAGTACGC GATGTTCTTC CTCCTCGTGG CCATGTGCTT 
    CGGCGAGCTG CTCGACGAGC GCGCCGTGCG CGACATCGCC GCCGCGCAGC 
    GCGACCTGCT GCTCCACTCC TCCAAGAAGC TCAGGGTCTT CGCCTTCCTC 
    CCGGCCATCA CGACGCGCCT CTTCGCCGGC CGGATGAAGG CCATGATCGC 
    CATGCGCCAG CGGCTGAAGG GGATGTTCAT GCCGCTGATC GACGCGCGCA 
    GGGCGCGCAA GAACCTGGTC GACGACCATG GCGACGCCAC GGCGCCACCA 
    CCGCCGGCGG CGAGCGCCAC GACGTTGCCG CACTCGTACG TCGACACGCT 
    GCTCAACCTC AGGATCAACG ACAACGGCGG CGAGCGCGCG CTCACCGACG 
    ACGAGATGGT GGCGCTCTGC TCCGAGTTCC TCAACGGCGG CACGGACACC 
    ACCTCGACGG CGCTGGAGTG GATCATGGCG GAGCTGGTCA AGAACCCAAC 
    CATCCAGGAC AAGCTCCACG GCGAGATCAA GGGCGCCATC ACCTCCAACT 
    CCGGCAAGGT GTCGGAGGAG GACGTGCAGA AGATGCCGTA CCTGAAGGCG 
    GTGGTCATGG AGGGTCTACG GCGACACCCG CCGGGGCACT TCGTGCTCCC 
    GCACGCGCCG GCGGAGGACA TGGAGCTCGG CGGGTACACG ATCCCCAAGG 
    GCACACTGGT GAACTTCACG GTGGCCGACA TGGGCATGGA CGGGGCGGCG 
    TGGGACAGGC CGAGGGAGTT CCTGCCGGAG AGGTTCATGG CCGGCGGCGA 
    CGGCGAGGGG GTGGACATCA CCGGGACGAG GGAGATCAGG ATGATGCCGT 
    TCGGCGCCGG GCGGAGGATC TGCCCGGGGC TGGGCGTGGC GACGCTGCAC 
    CTGGAGTACT TCGTGGCGAA CATGGTGGCG GCGTTCGAGT GGCGGGCGGC 
    GGAGGGGGAG GCGGTGGACG TCGACGGCGA GAAGCTCGAG TTCACCGTCG 
    TCATGGAGAA GCCTCTCCGG GCGCGCCTCC TGCCAAGAGC CGTCACTGTT 
    TGACTCTGGG TGAGCTTTGA CATTTGGGGG GGTTTATTAG ACATTTGACA 
    CTCTCTCGCT AATGTAGTTT CATGCTTTGT AATAATGGTA TTATTATTAG 
    TTTCCTTTTG ATGAATAAAA GAATTCCAAT CTATTTTGTC AT

    Gene models with high sequence identity

    1. AT1G64950.1 [+] show detail - cytochrome P450, family 89, subfamily A, polypeptide 5
      E-value: 3e-121; Score: 432.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, E-class, group I 2.1e-30
    FPrintScan Cytochrome P450, C-terminal 3.7e-11
    FPrintScan Cytochrome P450, C-terminal 3.7e-11
    FPrintScan Cytochrome P450, C-terminal 3.7e-11
    FPrintScan Cytochrome P450, C-terminal 3.7e-11
    HMMPfam Cytochrome P450 8.3e-87
    Gene3D Cytochrome P450 5.6e-101
    HMMPanther CYTOCHROME P450 SUBFAMILY 79A 7.9e-274
    HMMPanther Cytochrome P450 7.9e-274
    PatternScan Cytochrome P450, conserved site 0
    superfamily Cytochrome P450 1.7e-108

    See the detailed result >

    AT1G64950.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 89, subfamily A, polypeptide 5
    Curator Summary
    member of CYP89A
    Computational Description
    "cytochrome P450, family 89, subfamily A, polypeptide 5" (CYP89A5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 33837 Blast hits to 33688 proteins in 1718 species: Archae - 63; Bacteria - 4127; Metazoa - 11783; Fungi - 7185; Plants - 9256; Viruses - 3; Other Eukaryotes - 1420 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR