K32829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32829

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32829

Determination of introduced cDNA(s)

  • J033066K12 - Rice Full-length cDNAs - Original: J033066K12

    full reading [+] show sequence

    Nucleotide sequence: J033066K12 - full reading
    TTACGGCTTG TGATATCTTT GCTCGTTTTT CTTCTTCTTC TCCGACGATC 
    TGCTGCTTCT TTCCGGCAAT GTGGCTCCAA AATCTTGATC CAGGCGGCGC
    GTGCGGGTTC AAGCACACCA ACCAGTACCC GTTCATGTCG ATGACCTCCT
    GCGGCAACCA GCCATTGTTC AAGGACGGCA AGGGATGCGG CTCTTGCTAC
    AAGGTGAGTA GAGTACTCCA AACTAATCAA AAGATTAAAG AAAGAAAAAG
    AAGCCCATTT ACATGGGGGG CCTAACTGTC AAAGCAGTGC ATGCCGTTGC
    AGTCTTGACC ATCGGTCCGC AGGGTGGGAC CCACCGCCGA GAGCATGTGC
    GCGTGGCCCC CTCCACCCCG GTTTTCGGTG GCAGTGATTG GCGCGCCAAA
    TGCATTCAAT GCTAATGTTT TTTCTTCTTT TTTTTTCTTT TTAACATTAC
    AGATCAGATG CACCAAGGAC CAGTCGTGCT CCGGCAGGTC GGAGACGGTG
    ATCATCACCG ACATGAACTA CTACCCGGTG GCTCCGTTCC ACTTCGACCT
    CAGCGGCACG GCGTTCGGCA GGCTCGCCAA GCCTGGCCTC AACGACAAGC
    TGCGCCACTC CGGCATCATC GACATCGAGT TCACCAGGTC AGTGAAAGAA
    ACCACATTGT ACTGTACTGA TGTAGTAGTG GTGGTAGTGT AGCCCTCCAA
    ATCTGCCGTT GAAATTTGCT TCCAGTACTA CTACTAGTAG AGGGTAAAAG
    TTGGGTGGAG TGGATGATGA GATGAGTGGA TCCACCCAAC TGCACACCTT
    TAACTCCATT TCCGGACACC GGCAATGGAT TGCACATGCA TGTGCAGCTC
    AGATGCAATG CAGCAACAAC TTTATTAGGT TTAGGATGTT TTTTTTTAAA
    AAAAAATTTC ATCCTCTGCC AGACTGCAAC ATGCTCGTTT TTGGCTACTA
    GCAGTAGGCA CGCCTCCCTT CTGCAGCCAA ACGTATGATG CGTGCCCTGC
    TATTATACGC CACCGGCCAC CCCATTTCCA TCTTGTAGTA AAATGCTTTT
    TATCAATCAA TGGGCCCCAA TCCGATTAAC AAAAAAAGTA GGACACGATT
    ATTGTATTTC CACATGACCA GTAAAGCAGG CAGCATATGA CAAGATTAGC
    AGCGGAGTAA TTCTCACTTG TGTTTAATTA ACTTAATGGT GGATTCGTGT
    GATGTGATGG TGCAGGGTGC CATGCGAGTT CCCGGGGCTC AAGATCGGGT
    TCCACGTGGA GGAGTACTCG AACCCTGTGT ACTTCGCGGT GCTGGTGGAG
    TACGAGGACG GCGACGGCGA CGTGGTGCAG GTGGACCTGA TGGAGTCGAA
    GACGGCGCAC GGGCCGCCGA CGGGGAGGTG GACGCCGATG AGGGAGTCGT
    GGGGCTCCAT CTGGAGGCTG GACACCAACC ACAGGCTCCA GGCCCCCTTC
    TCCATCCGCA TCCGCAACGA GTCCGGCAAG ACGCTCGTCG CCAACAACGT
    CATCCCGGCC AACTGGAGGC CCAACACATT CTACCGCTCC TTCGTCCAGT
    ACAGCTGAAC CGCCGCTCGC CGGCGGCGAC CCTCGGCGCC GGCATCGCCG
    CCGCTGCTGC TGCTAGTAAT ACTACTACTG CTATGATGTA ATTGTGTTAC
    CGGTTGGGTT CTTTGAGTTT GTTGGGGTTG GGGATTGTGT GGTCGGTCTG
    TGTTGCGATT TGCAGAAACC GGGCGAGCGA AAGAAGAAAA AAAAAGCTGT
    GTGGGAAATG GAGGAGGTAG GCGTACAAGG TTATGCTCTC CCGCCCACTC
    TCGCTTTTAT AATTTATCAT TTTCAAATGG TGATGATATG ATGATTAATC
    AAAAGGATTA TATTGCTACT TAAATTGTAT GGT

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 7e-22; Score: 102.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pollen allergen/expansin, C-terminal 2e-31
    HMMPfam Rare lipoprotein A 0.000084
    HMMPfam Rare lipoprotein A 0.000000000029
    superfamily Pollen allergen/expansin, C-terminal 1.5e-31
    superfamily Barwin-related endoglucanase 0.000000062
    superfamily Barwin-related endoglucanase 0.000000000000054
    ProfileScan Pollen allergen/expansin, C-terminal 25.612
    ProfileScan Expansin 45, endoglucanase-like 12.609
    ProfileScan Expansin 45, endoglucanase-like 12.315
    Gene3D Pollen allergen/expansin, C-terminal 2.4e-31
    Gene3D Pollen allergen, N-terminal 0.0000000083
    Gene3D Pollen allergen, N-terminal 0.0000000000000013
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Expansin/Lol pI 0.0000037
    FPrintScan Expansin/Lol pI 0.0000037
    FPrintScan Major pollen allergen Lol pI 0.000000000000018
    FPrintScan Major pollen allergen Lol pI 0.000000000000018
    FPrintScan Major pollen allergen Lol pI 0.000000000000018

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR