K32833

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32833

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32833

Determination of introduced cDNA(s)

  • J033077H09 - Rice Full-length cDNAs - Original: J033077H09

    full reading [+] show sequence

    Nucleotide sequence: J033077H09 - full reading 
    GGTCCCCCGG CAAAATCCCC CGTGCTAGGG TTTCCGCAAC CGCCTCCGCT 
    GCTACCCACC CAACCTGCAT TGCGACAGCG ACGCGGCGCG GCCATGGCGA 
    CGGCGGCGAA GGGCGGAGAG AAGCCGGCGC TGAGGAAGCC GGTGTTCGTC 
    AAGGTGGACC AGCTCAAGCC GGGCACCTGC GGCCACACCC TCACCGTCAA 
    GGTCGTCAGC GCTAACCCCG TTCCTGCCCG TGGCCGTGCC GGAGGGGGCG 
    GCCCGGCCGT CGGATCTCGC CCCGCGCGCA TCGCCGAGTG CCTCGTCGGC 
    GACGAGACCG GGGTCATCGT CTTCACCGCC CGCAACGAGC AAGTGGACAT 
    GCTGATGCCA GGAAATACAG CAATCTTGCG GAATGCGAGA ATCGATATGT 
    TCAAGGGCTC AATGAGGCTT GCTGTCGACA AGTGGGGACG TGTGGAGGTT 
    ACAGAGCCTG CCAGTTTCGC CGTGAAAGAA GACAATAACC TATCGCTTGT 
    TGAGTATGAA TTGGTTAACG TGCCAGAGTG ATTGTTCCAT CAAAGTTTCT 
    ACTGCTAGCA TAAAAAGGGA ATGCCAAACT TGTAGTGATT TTTGTTTAAA 
    AGATCGTAGG AGGGGCTATG GCGTTTTGTT AAGAGTTCTC AATCAGTGAA 
    ATTCATATAA AATCCTTGTG TGTGCACCC

    Gene models with high sequence identity

    1. AT4G28440.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 5e-43; Score: 171.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleic acid-binding, OB-fold 1.8e-25
    superfamily Nucleic acid-binding, OB-fold-like 2.5e-23

    See the detailed result >

    AT4G28440.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G33845.1); Has 214 Blast hits to 214 proteins in 47 species: Archae - 22; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR