K32835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32835

Determination of introduced cDNA(s)

  • J023136M21 - Rice Full-length cDNAs - Original: J023136M21

    full reading [+] show sequence

    Nucleotide sequence: J023136M21 - full reading 
    GGCCAACTTT AGTTTTCCAT CGTGAACGCC GGGAATCACG AAAGATGAGA 
    GCGAGCGGAG GGCAACAAAA AAAAAAAAAA GCTTCTTTCC GTCCCGTGAA 
    TCAAACCGGG CAAATCGTAG AAGACCTATA CGCAAATTGC AGAAGACCTA 
    TAGAGCTTTA AAGGATTCAA CGGGAAGAAC CCGATACTCG TTGGGCCGTG 
    GGGAGGGTTG GGAGGAACCC TTTGGGACGA CGGCGTGCAC TCCACGGTGA 
    GGCAGGTCGT GATTACTCAT GGTGCAGCCA TTGATTCCAT CAAGATCGAG 
    TATGACCTGA AAGGAAAGTC AGTCTGGTCA GAGAAGCATG GAGGTGATGG 
    AGGCACCAAA ACTGATCAGG TGAAACTCGA CTACCCTCAA GAAATCCTCA 
    CCTCTGTCAG TGGCTACTAC GGATCATTGG GAGGCTGCAT CGTCGTAAGA 
    TCACTAACAT TCAGGAGCAA CCTCTCCAAG TACGGGCCTT TCGGCTCCGA 
    GGAAGGGACG CCCTTCTCGC TCCCAGTGGC GGTCACCGGT AAGGTCATCG 
    GCTTCCATGG CAAATCCGGG TGGTTTCTCG ACTCAATCGG CTGCCATTTC 
    AAGAAGGAGA AGAACGCCAC TCCGTCGTCC AATGCTCCTT CAGCTCTCAG 
    GAGCATCACG AGACCTCATG ACAAGAATGG CAACAGGTAC GCAGATAGCA 
    ATGCTGGGTA TGACATGGTT CTTGCCGTCA GAGACAGAGG TGACAGCTAC 
    AGTGTCCTGA CTAGCAACAA TCCCAAGGAA CAGTATCCTA ACCAATCACA 
    GGATGCTACT CTCTGGAACA AGATGGTGTC ACTGCCTAGT TTCTACTCGG 
    ATAATGGGAC CATGACAATA AGCACTCCGG TGAGATTTGG TCCCTGGGGT 
    GGAAATGGCG GCACCATATT CGACGACGGT ATATACACTG GTGTTCGACA 
    GATCAATTTA AAGCGAGGAT TGGGTATATC GACGATGAAG GTCCTCTATG 
    ATCGAAATGG GCAGGCTATA TGGGGTGATA AGCGTGGATC CAGTGGGGCA 
    GCAAGGGCTG AGAAGGTAGT ATTCGATTTT CCATCAGAGA TCTTAACTCA 
    CATAACTGGT TACTTCAGTT CGACGATGAT CATGGGATCA ACGGTGATCA 
    AGTCTCTGAC ATTCCACACG ACGAAGAAGA GCCATGGTCC TTTCGGGGAT 
    G

    Gene models with high sequence identity

    1. AT1G19715.3 [+] show detail - Mannose-binding lectin superfamily protein
      E-value: 2e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mannose-binding lectin 6.6e-43
    superfamily Mannose-binding lectin 2.7e-25
    HMMPfam Mannose-binding lectin 5.49999999999995e-33
    HMMPfam Mannose-binding lectin 0.000000000001
    Gene3D Mannose-binding lectin 2.39999798157241e-40
    Gene3D Mannose-binding lectin 2.90000354677958e-20

    See the detailed result >

    AT1G19715.3

    Model type
    Protein coding
    Short Description
    Mannose-binding lectin superfamily protein
    Computational Description
    Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1).
    Link
    InterPro Scan - TAIR