K32837

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32837

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32837

Determination of introduced cDNA(s)

  • J033129P09 - Rice Full-length cDNAs - Original: J033129P09

    full reading [+] show sequence

    Nucleotide sequence: J033129P09 - full reading 
    GCTACAACTA CACAAACCCA TCACCTTTCT CCTCCTCTTC TTCTCCTTCT 
    CCTTCCAAAA AACCCAAGAA AGTGAGGTGT AAGTGAGATT AATTGGTTGT 
    GAGAAGCAGC AATGCATGCT CCAAGAAAGT TCAAGAAGGC GTTCATGGAG 
    CGGCTGCTGC TGAGCCTGCA GGTGGCCGGG CTGACGTCCA AGTCCATGGG 
    CCTCCGGGAG CGCCGCGATG CCGTCAGGCT GTCCTCCGAC GTCGCCATGG 
    CGTCGGCGCG CGGCCGCGCG GCGGAGGCGG CGATCGCGCT CCAGCCCAAG 
    CAGGCGGTTA GGGTTTACCA GGTCGGGGAC AAGGTGGAGG TGAGGAGGGA 
    CCGGGAGGTG TACGGCCACT CGTGGTTCCA CGCCAAGGTG GCCAAGGTGA 
    TCGACAGGAT GAGCTACCTC GTCGAGTACT CCGATCTGGA GAAGGGGGAA 
    GGGGAGGCCG TGGCCAAGGC GGTGGAGTAC CTGCACTGGC GGTTCATCAG 
    GCCGTCCGAG GAGCGCTCGC CGCGGGATTG CGATTTCCGG ATTGGCCCCG 
    GCGCCGCCGT CGAGGCCTAC TGCGACGGGG CATGGTCGCC CGGCGTGGTG 
    CGGAGCGTCG TCGGCGAGGG TGAGTATGAG GTAAGTGTCA ATGGAAAGAC 
    CAAGGAGGTT GTGGTGACCA AGGTGCGGGA GCTGCTTCAG CCTCAGTACA 
    AGTGGAATGG CAAGAACTGG AGGATTGTCT CTGCTAAGAG ACACTTGAGG 
    CAGCAGTCTA TGTCTGGAAA AAGCCCAAGC TCACCAGTTG ATGTGTTCTC 
    CAGTGATGAT GAACATAGAC ATGATACTGA ATCTTCTGCC CGGAGAAGGT 
    CAATAAAAAG GTCAAGGAAG GAGTTCAATG CAACGCAGCA ACCTGAAGGC 
    ATGTTACCTG AAGATTCTGA GGATGTTTCA CATTCTGAGA TGAACACTCC 
    TTTATCTGAA TTATGCAAGT CATCGGGAAG CAATCATTCT CCAAAGTCTT 
    GCTCTGACCC ATCTGGAATG AAAAAAATTC AAGTGCTTTC GAAGAAGATA 
    GTGAGTAACT GTTTGGTACC AGTGAAGGGG ATTCTTGATG CTTCGACAGG 
    ACATAGAATA CCTCAGAATG AATCAAGAGA AGATGGTATT GGGAAGACAA 
    TGGTTAATCA AGAAATTATA TCTGACATGA TGCTTACGAA TGGTCAGGCT 
    AATACATCTG CTTGTGGAAC AAGTATGAAT GAAGGCTATG CTATGCTTTC 
    AACTAAAAAG TTTGGAAAAC AGAAAATGGC ATTATCTCGC AGATACAATC 
    CTGTACGGAA GGCACGGGGA GGGCTGCTCT CTGTCCAGCA ACTACACACT 
    AAAAAAATCA TGCCTTCCGA GCTCAAACGG GGTAAAATGA GACTTATTCA 
    TGCACTTCAG GACATGAACG ATCCCTCTGA TAATATTCAG TTAAAGGGAA 
    ACAGTACTTC TCCAAGCAGA GAAATTATTT GTGCTTTGAG TGTCTCTTCA 
    CAATGCAATA CCCCATCTCC TCTGGGTAAA CAAATAAAGG CTTTTGACTT 
    CGTGTCAAGA GAGGCTGATA GTGGTTCAAA TACTAAGTTT CTTATCTTGA 
    AGAAATTTGC TAGAAAGAAG GGCTCCAAAG AATCAGATAG CCCACATAAC 
    TCATTGGATG CAACCAGTAC TGTCCAGCCA ATACGTAGAA AGAAAGCTGC 
    AGGGCGACTG AAAGGATCTT CTGTGGAGAG ACAGTTGGAG GGTGAAACTC 
    ATATTCAGCA GCAGCTTAAT AAGGCTTTGG AGGATAACCT GAATGCAAAT 
    GAAGTAACAA ATCAAGAACT GTTGCCACTA ACACCTCCAG GCTTTGAATC 
    AGTTGTCAAT GGAAAACGTT CTCGTGATTG GAACACTGAT GGTTTCTCTG 
    AAGTTAACTT AAATTCTAGT CTGTTCGATG AAGAGCTGAC TGCTACAATC 
    AATAGCATTT GTCAAGATAA TCATAATAGA GATGCAGAAT CTGACAATGT 
    GGCTACCGAA GTAGCTGAAA TCAGCCATCT TATGGAGAAA TCTATGTTAC 
    CTCTTGACTG TTCAGTTGGG CATGAGGTGG GTGGGAAAGT GGGACAGGGA 
    TCAATCCAAT TACATATTGG GAACAGTGGG AGTTTGCCGT GCACCAGTGA 
    CAATGCCATA TTAAGGCGCT GCTCATTTGG TGGGAATTCT ATGGTCTCAG 
    ATATATCTAA GTGTCAACTC ACTGGTCAGC AGGCCCCATT CACCAAGAGG 
    TCCCATGTTT GGTCTTTATT TGAAGAGATG GATGTGTTTC GAAAGATGCC 
    ACAGCAGCCA CATTTCCTTC CACTCAAGCA CCATCCACTA GGGCTGCGTG 
    AAGGAACGGC TTTAGGTCTA ATGTGGTCAT ATACTGATGC AGTGGATAAT 
    ATAAGTAAAT TATGCATAAC GGACAGCATG GAAATATTTG AAGACCACAT 
    CAAAACACTT ACCATTTTAG AAGAAAATGG ATTCAGTGTT CAGTCTTTGC 
    AGCAGATTCT GACCAAATTG CTCCAGATCA GATCAGATTA CACCAATTCT 
    CTCAGAGACG GGGAGAAACT GAAAGAACAG ATAGCGGATA AGGCCTTTGC 
    TGTGTCCCGT GTTGATGCTC TGCTTGATGA AAATGATAGT GCTATAGCCA 
    AGCTTGAACA GGAACTTGGG AAACTCCGAT GGAAAGGCCA GAAGATGTCA 
    AAGAAAAAGG AGGATGAAGA TGCAGAGCTG TCAAGACTGA AGGCGGAGAA 
    TAACAATGCT GAGGAAGCAC ACGGTGATGC TAAACGACAG TTTGACAGCA 
    TCCGGGCTGA GCTGCGGCAA CACTTAGCAA TTGATAGTCA GTAACCATCC 
    TGATGAGTCC CAACTTAGGC ACTGTATGCT GGGTGCTTAT CTAAGACTAG 
    GAACCCTGCC TGTTGAATGT GTCAGTCCTG ACCTATTATT TCTAGACCAT 
    CTATCTGTGC TAATCTGATC TACCTATCTC TGTACTTATT TCTTCCTAAA 
    ATTTGCCAGC TATCTGCTGT TATTAGTTCC T

    Gene models with high sequence identity

    1. AT3G62300.2 [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
      E-value: 9e-17; Score: 86.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tudor-like, plant 0.016
    HMMSmart Tudor-like, plant 21
    HMMPfam Protein of unknown function DUF724 9.2e-68
    HMMPfam Agenet 4.1e-10
    Coil coiled-coil 0

    See the detailed result >

    AT3G62300.2

    Model type
    Protein coding
    Short Description
    DOMAIN OF UNKNOWN FUNCTION 724 7
    Curator Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
    Computational Description
    DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1).
    Link
    InterPro Scan - TAIR