K32907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32907

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32907

Determination of introduced cDNA(s)

  • J013002D11 - Rice Full-length cDNAs - Original: J013002D11

    full reading [+] show sequence

    Nucleotide sequence: J013002D11 - full reading 
    GTTTTTGGGA GAGAGGCCCC TCTCACAAAA CACCACAAGC TTTAGATCAT 
    AGAATGGATG AGACCGGTGC GGCCGAGGCG ATTGGGATGG AGGCGCCACC 
    ATCCCCGACG GCCATGGCCA CCTCTGGTAG CTGCGTGGTG GAGATACCGA 
    CGGATATAAC GCTCAGCCAT GATGACGGCG AGCGATTTCC TGGGGAGATA 
    TCGATGGTGC GACCACAGCG GCACTCGATT TATCGGGTGC CAGAGTACAT 
    CAAGGACATG ACCAACCGGG ACGCGTATCG GCCGCAGGTG GTGTCGCTGG 
    GGCCCTTCCA CTACGGCGAA CCCCCGTTGA AGCCCATGGA GGCGCACAAG 
    CAGCGCGCGG TGGCGCACAT GGTCAGCCGG AGTGGGAAGC CACGGCAGGA 
    GTTCACCGCT GCCGTGGAGG GGATAGCCGA ACAACTGCGG GGCGCTTATG 
    AGAACCTAGG CGAGGAGTGG AGTGGAGGGC GGTTCGTGGA GCTGATGGTC 
    ACCGACGGCT GCTTCTTGCT GGAGGTGATG AAGGATGAGG TGGAGGTACA 
    AGGTTATGGG TCCGATGACC CTGTTTTCAG CAAGCATGGC CGTCTATACT 
    TGTACTCCTA TATCATCTCT GACATGCTCT TGGTTGAGAA CCAGTTGCCA 
    TTGCTCCTCC TCCAAAAGCT CACGCTTGTT GCAGATCCTG ACACTGAGGA 
    TGATAGAGGG ATAAACCACC GGGTGCTTGA TCTTCTTTCC TATACCACCA 
    CGCCTACCGC GCCTACCACC CCTGTCGATG AGTTTTTGGG GCTCCACCCA 
    CTGGACGTTC TCCAGAAAAG CGTCCGTGGT ACTCGTCAAT ACCGCCAAAG 
    GCCAATAGGA GACGGACACA TGCCTTCCGC TGCAGAGCTC CGTGAGGCAG 
    GAATCCATTT CAAGGTGAGC ACAGGTGAAG GATTCGCAGG CACGGTCAGC 
    TTCGAACGAG GCGTACTGCG CGTCCCAAAG ATCTTCCTGT ACGACGACGC 
    CGAGCGCATG TTCCTCAACC TGATGGCCTT CGAGCAGCTG CGCCCGGGCG 
    CTGGGAACGA AGTGACCGCG TTCGTGTCAT TCATGGACGA CCTCATCAAC 
    ACGGCCAAGG ACGTGCGGCT GCTGAGGGCC AAGGAGATCA TCGAGAGCGG 
    CTTGGGAAGC GACGAGGCGG TGGCGAATCT GATCAACAAC ACGCTGACGA 
    AAGGCTCGGT GATGGACGAA GACAGCAGCC TCAACGACGT GATGTCGGAA 
    GTGGATGCCT ACTGCAAGAT GCGGCGGAAC AGGTGGAGGG CCATCCTCCT 
    ACACACCTAC TTCAGTAACC CTTGGGTGTT CATCTCCCTC GTCGCTGCTA 
    CTGTCCTGCT CATTGCTACT GTCATCCAAA CTGTCTACGC TATCCTGTCC 
    TTCAACAGCA AGACCTAATT AAAACCTTGC ACCATGGTAA ACTCCATGAA 
    CATATATATA TTCATCTTCA GGCCTCGCAG CTTAATAATA GTTAGTATAT 
    TTGAGCCAAG AATTATCCGA AGTACTCTTG CTTTTATACC ACCATGTAAT 
    ATTCTGTCTC TATATCTAAT CCCAATCAAA CCTTCC

    Gene models with high sequence identity

    1. AT3G50120.1 [+] show detail - Plant protein of unknown function (DUF247)
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G50120.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF247)
    Computational Description
    Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1); Has 1189 Blast hits to 1046 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR