K32913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32913

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32913

Determination of introduced cDNA(s)

  • J023050B17 - Rice Full-length cDNAs - Original: J023050B17

    full reading [+] show sequence

    Nucleotide sequence: J023050B17 - full reading 
    GTCTTCAACT GGCAGATATC CCACCACAGC TCTTCCAAGG CTCCAACCCC 
    AAATCCAAGC CATAAAACCT TTGCAACAAC CATGAGAGCT AAGCTTCCAA 
    GCTCTGAATT TTCAGGATGT TGATGCCAGC TTCTGCTCAG ATCCCTCATC 
    ACACAATACG TCCTGTTGCA AGTTACTTAG TTCTGCATCG ACGGCGCCGG 
    CACAAGTCTG GCCGGCGTTT TAGATTGCAG GGTCCTACGA GGAGGGTGGT 
    CTTTTGCACT CGCAGTGTGC TAGGTTCCAG CAATGGCGCG CCATCTGGTG 
    GCCTTGTCAA GAAAAGAAAG ATTGTGGAGC ACATCATTCT GCTTAGAGCC 
    AAGCCAAATA TCTCGGACGC TGAAGAAAAG GACATGCTAG ATTACTTGTA 
    TACTTCTCAG TATCAGATGA GAGGGATTCT AGCTGTGTCA TTAGGGCGCA 
    TAGAGGATCC CAACACAGAG AACTTTACGC ATGCTGTTTT GATGCGTTTT 
    CAGCAGAAAG ACGACATTGC AAAGTTCCAC AGTAGTCCCT ACTACTACAA 
    AATTCTCGAT GAGCACGTAA AACCCGTTTC ATATGGCTCG GTTTCTGTAG 
    ATTTTGAATC TGAGGTTGAA GATGACATTA TCCCTCTCTT CCGTCGGGGA 
    GAGGATTTTA ACTATGGAGT GGAGTTCATG CTACTGATAT CTTTCTTGGA 
    AAGTGCATCT GGAGATTCAG TGGAGGATGC ATTAGCTTCT CTTCAGAGGT 
    TCATCAGTCA ATGCAGTTCT TTCATTGTTC AGGCAACCTT AGGCTGCTGT 
    CTGAATCATA TGGACAGTGG TTACAGTCAT GCTGCAGTTA TCCGTTTTCC 
    GTCATTTGAT GACTTCAAGA TATTCAGGGA GGGGATGGAA TACAAGGATA 
    TGTGGGCATC AACATTTCAA CCGATTGTGG AGAAATCTCT TGAGCTACAC 
    TTCACAGTTG ATCCCGTGGG TAACCAGCTG ATGTAGATTC TGAGCACCTG 
    ACAAAATATT CAGTCCTGGA TTGGACGTAT ATATTGTTGG TAAACTCCTG 
    AGTTGCTGAT GAGGGAAAAG TATTGAAATG AAATCTTGAG GTTTTACATA 
    GGCGATTGTG TTCATCACAT AAACGCCTTC CTTTTCCTTG CCCGGAATGC 
    AAGAACGAGA GATACCTTGA AAATGTTTTA TCCTGTCATG AATGTACCTC 
    AATCGCAAGA TGTACAGTGT GGTTGGACCG GCTGGTTGGT TAATTATATT 
    GGTCCTGACA TGTTCCTATC CT

    Gene models with high sequence identity

    1. AT2G32500.1 [+] show detail - Stress responsive alpha-beta barrel domain protein
      E-value: 4e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.1e-08
    Gene3D no description 0.00074
    HMMSmart Stress responsive alpha-beta barrel 7.3e-10
    HMMSmart Stress responsive alpha-beta barrel 0.023
    HMMPfam Stress responsive alpha-beta barrel 6.7e-16
    HMMPfam Stress responsive alpha-beta barrel 6.6e-07
    superfamily Dimeric alpha-beta barrel 2.7e-16
    superfamily Dimeric alpha-beta barrel 1.7e-06

    See the detailed result >

    AT2G32500.1

    Model type
    Protein coding
    Short Description
    Stress responsive alpha-beta barrel domain protein
    Computational Description
    Stress responsive alpha-beta barrel domain protein; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: Stress responsive alpha-beta barrel domain protein (TAIR:AT2G31670.1); Has 68 Blast hits to 66 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR