K32915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32915

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32915

Determination of introduced cDNA(s)

  • J013055L22 - Rice Full-length cDNAs - Original: J013055L22

    full reading [+] show sequence

    Nucleotide sequence: J013055L22 - full reading 
    GGATTCCCTT CTCTCTTCTC TCTCTCCTCC ATTTATTCTG GCTCATTAGC 
    TGCAGCCGTG CAAGCGAGCA TCGTCCTGTT CCTCGCGTCG GGGGAATCAA 
    GAATCGGTAG GAATCGATCG AGGGGTTGAG TGGTAGGTGC TCCTAGGAGG 
    CGGCAATAAT GCTGGAGGGG AAGGCGCGGG TGGAGGACAC GGACATGCCG 
    GCGCGGATGC AGGCGGCGGC CACGTCCGCG GCGTCGCGGG CGCTCGACCT 
    CTTCGACGTC GCCGACTGCC GCGCCATCGC CGGACACATC AAGGCGGAGT 
    TCGACAAGAG GTACGGGGTG GGGTGGCAAT GCGTGGTGGG CGCAAACTTC 
    GGCTGCTTCT TCACCCACAC CAGCGGCACC TTCATCTACT TCTCCCTCGA 
    GCGCCTCTCC TTCCTCCTCT TCAAGGCCGC CGCCGCCGCC GCCATCGCCG 
    CCTCCTAATC CTTCCATGCC CGGAGATCCA TTCGCCGGCG AACTACGGCG 
    TCGAGCGATA GCAAGAGAAG AGACCAACTT ATGTACGTAC GTAAGAATGT 
    AATGTAAGCT AGCTCAGATG CGCCCCATTT GTACATACAC CATGCTTGTG 
    CAATCTTTGC CTTCTCCTTC TTGATGCTGC TCATGTTCTT GGTCACCGTG 
    GACGCCTACG CCACAGCCTT GTATCAAGCT TCCATTTTCA GTTTTACAGC 
    GTTTCATCCC C

    Gene models with high sequence identity

    1. AT1G52240.2 [+] show detail - RHO guanyl-nucleotide exchange factor 11
      E-value: 1e-30; Score: 130.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Dynein light chain, type 1/2 1.2e-31
    superfamily Dynein light chain, type 1/2 6.5e-26
    Gene3D Dynein light chain, type 1/2 5.4e-24
    HMMPanther Dynein light chain, type 1/2 1.1e-33

    See the detailed result >

    AT1G52240.2

    Model type
    Protein coding
    Short Description
    RHO guanyl-nucleotide exchange factor 11
    Curator Summary
    Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
    Computational Description
    RHO guanyl-nucleotide exchange factor 11 (ROPGEF11); CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT3G16120.1); Has 1254 Blast hits to 1252 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 666; Fungi - 103; Plants - 255; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR