K32922

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32922

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32922

Determination of introduced cDNA(s)

  • J013120K21 - Rice Full-length cDNAs - Original: J013120K21

    full reading [+] show sequence

    Nucleotide sequence: J013120K21 - full reading 
    GCTCTCTCTC TTCTTCTCTT CTCTTCTCCT CTCTTCCCCG TCGCCGCGCA 
    CCTCCCGATC CCTCCCTCCG CTCGCTCGCC CATCGCGCCA GGTGGGCTCT 
    TTGGACACCC GGTGATGGAT CACGCGGAGC TGACCACCGA GCAGGTTCTC 
    AAGAGGGATA TTCCATGGGA ATCATACATG GCAAATAAGC TGATTTCCGG 
    GACATGCCTT CAGCTTTTGC GACGTTATGA CCACAAACCA GAAAGCCAAC 
    GAGGTCCTTT GCTTGATGAG GATGGGCCAT CCTATGTTCG AGTGTTCCTG 
    AATATCTTGC GGAACATCTC CAAGGAAGAT ACTGTTGAAT ATGTGCTTGC 
    CCTGATTGAT GAGATGCTTG CAGTAAATCC TAAACGAGCA GCACTGTTCT 
    ATGATAACTC TCTCTCTGGT GAAGACATCT ACGACCCTTT CCTAAGATTG 
    CTCTTGAAAG GTAACTGGTT TGTGCAAGAA AAAAGTTGTA AGATATTGAC 
    CCAAATAATA AGTGCACGAC CCAAGATGCA GAATGGCATA GTTCCAAATG 
    GAGAGGCTTC AAATTCAAAG AGCAAGCTAA CATCTACTCA AGATGTGTTA 
    AGAGGTTTGG TTGATTGGCT CTGTTCTCAG CTGAGGAATC CTACCCACCC 
    AAACTGTTCT GTTCCTACTG CTATGCATTG TCTTGCCACT TTGCTAAGAG 
    AGCAGTATGT TAGAGCTTTA TTTGTTCAGG CGGATGGTGT AAAACTGCTC 
    ATTCCTTTAA TTTCTCCAGC TTCCACACAA CAGTCGATCC AGCTTCTCTA 
    CGAAACTTGC CTCTGCATCT GGCTTTTATC CTTTTATGAT GCAGCCGTTG 
    ATTATTTGTC CACTACAAGG GTTATGCCAA GACTTGTAGA GGTTGTGAAA 
    GGTTCAACAA AAGAGAAGGT TGTCAGGGTC GTTATCATGT CTATCCGTAA 
    CTTGCTTGCA AAGGGTGCGT TTGCTGCCCA AATGATTGAT CTTGGACTGC 
    CACACATAGT ACAGAATTTG AAAGCTCAAG CATGGACTGA TGAGGATTTA 
    TTAGATGCGC TGAATCAGCT AGAAATAGGA CTCAAAGACA ACCTTAAGAA 
    GTTGAGTTCA TTTGAGAAGT ACAAGCAACA AGTTCTTCTT GGCCATCTTG 
    ACTGGTCTCC AATGCACAAA GACCCAAGTT TCTGGCGCGA GAACATTAAT 
    AATTTTGAAG AAAATGATTT CCAGATTCTA CGTGTGCTTA TGACAATCAT 
    CGACACATCG GCCGACACGA CTGCTCTTGC TGTCGCCTGC TATGACCTCT 
    CACAGTTCCT TCAGTACCAC CCTTCTGGGC GCATTGTGGT GGCAGATCTG 
    AAGGCGAAGG ACCGAGTGAT GAAGCTCATG AACCACGAGA ACGCCGAAGT 
    GAGGAAGAAT GCCCTGCTCT GCGTGCAGAG GCTTTTCCTT GGTGCGAAGT 
    ACGCGAGCTT CCTGCAGACC TAAGACCCAG ACAAGAAACT CTTGAAGTTT 
    TGTATTTATG CTTTAGAGCC AGAGAAACAC CAGGCCATTT GTCATAAATG 
    GTGAAAACCA TGATTGAGAA AGACAGACCT CGAAAATTCT TGTCCAGTAT 
    ATCCTGTCGT TATTTCATTT ACTAAACCGA TGTATAATAA ATAATCAGCT 
    ATTCCTTGCT CGATGTAATA AAGTGTCACA GAGCTTGTTT CTTCCTTTCC 
    TCTGAAGATG TTTTTGTCCG AGGAAGCACA CACGGGTTAT GTATAATAAT 
    TTTCAATTTC TGTG

    Gene models with high sequence identity

    1. AT3G42050.1 [+] show detail - vacuolar ATP synthase subunit H family protein
      E-value: 0; Score: 659.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Armadillo-like helical 3e-88
    Gene3D ATPase, V1 complex, subunit H, C-terminal 8.2e-34
    superfamily Armadillo-type fold 1.4e-133
    HMMSmart Armadillo 5.2
    HMMSmart Armadillo 110
    HMMSmart Armadillo 81
    HMMPfam ATPase, V1 complex, subunit H 1e-92
    HMMPfam ATPase, V1 complex, subunit H, C-terminal 1e-41
    HMMPanther ATPase, V1 complex, subunit H 1.7e-134
    HMMPIR ATPase, V1 complex, subunit H 2e-196

    See the detailed result >

    AT3G42050.1

    Model type
    Protein coding
    Short Description
    vacuolar ATP synthase subunit H family protein
    Computational Description
    vacuolar ATP synthase subunit H family protein; FUNCTIONS IN: binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit H (InterPro:IPR004908), ATPase, V1 complex, subunit H, C-terminal (InterPro:IPR011987), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 505 Blast hits to 479 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 202; Fungi - 135; Plants - 70; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR