K32926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32926

Determination of introduced cDNA(s)

  • J023072A02 - Rice Full-length cDNAs - Original: J023072A02

    full reading [+] show sequence

    Nucleotide sequence: J023072A02 - full reading 
    TAGTGTTCTC CATCAGTAGC AGTATCAGAC AACACTTCTT CCACTCACTC 
    AATAATAAGC AGCAGCAACA CTACTCTAAT CAATACTCAA TTCTACACTT 
    GTACTACTAC ATCAGCAGCA GTGGACTAGC TGGAGGAAGA ATCCATTGTT 
    CATAAGCATG GGGCTCATCA GGCGGCTGAT CCCATCCGGA TTCCCTGCAA 
    TTCTCAGAAG GAGGATGAGG GGCCGGGCGG CGGTGTTCGC GGCGGTGCTG 
    GTCGTGTTCC TGGTGGCGTG CACCGCCGCG GCGGCGGCGG CGGCGATTAC 
    CATATCGAGG AAGCACCAGC ACAGGCCGGC GTCCGGGGCG GCGGCGAAGG 
    CGGCGTGCGA CGTGTTCGCG GCGGGGAGCT GGGTGGTGGA CGAGTCGTAC 
    CCGCTCTACG ACTCGGCGAC CTGCCCCTTC ATCCGCGCCG AGTTCGACTG 
    CCGCCGGTAC GGCCGCCCCG ACAAGGAGTA CCTCAAGTAC CGGTGGCAGC 
    CCAGCCCGCC GTGCTCCACG CCCAGGTTCG ACGGGGTGGC GTTGCTGAGG 
    ATGTGGAGCG GGAAGAAGGT GATGTTCGTG GGGGACTCGC TGGCGCTGAA 
    CCAGTACGAG TCGCTGCTGT GCATGCTGCA CGCCGCCGCG CCCAACGCCC 
    GGACCACCGT CACGCCGGCG TCGGGGAAGG TCGATCCCCT CACCACCGCC 
    CGCTTCGAGG AGTTCAACGT GACGATCGTG TACTACCTGA CGCACTACCT 
    GGTGGACATT GTCAACGAGA AGGCCGGGCG AGTACTCAAG CTGGACGCCA 
    TCGACCAGGC ACGCAACTGG CTCAGCGCCG ACGTGCTCGT CTTCGATTCC 
    TGGCACTGGT GGCCGCGCTC CGGCCCGACC CAACCATGGG ACTACATCCA 
    GGAGGGCAAC ACGGTGGTGA AGGACATGGA CAGGACGGAG GCGTTCAGCA 
    AGGCGCTCAA CACCTGGGCT AGATGGGTCG ACGCCAACCT CCTCCAGGCC 
    AACACCAGAG TCTTCTTCCA GGGCATCTCC CCCTCTCACT ACAGGGGCCA 
    AGATTGGGGC GACACGGCGA GTGCGACGTG CATGGGGCAG ACGCGGCCGG 
    TGAACGGCAC GGCGTACCCC GGGGGGCCGA TCCCGCAGCA GGCGGTGCTG 
    AGGAGCGCCC TCGCCGGCAT GGCGAAGCCG GTGTACCTGC TGGACTTCAC 
    CTACCTGTCG CAGCTGAGGA AGGACGCGCA CCCGACCAAG TACAACGGCG 
    GCATCTTCGG CGACGACTGC ACCCACTGGT GCGTCGCCGG CCTCCCGGAT 
    ACCTGGAACG TCCTCTTCTA CGCCGCGCTC ACCGGCCAGC ACTGATGGCC 
    GGCTGCTGAC CTGCTGTCAT CACGGCCGGT GATATGATTG AGATAGGATA 
    TAGTGGAAAT AATTAATCAA CAGGAAAAAA GAATTATAGA TACAGATTGA 
    TTTTATATAG GTCTATATGG AAAGAATTTT TCTCGAAAAA AAAGAAACAG 
    AAGATTATTG TTACCAAAGT GACAGAAGAA ATGCCTGATT CTCTCTCAGA 
    AATGGGGGTG AATTAAAGAT GCTGTAATTG GTTGGCAAAG AAGGATAAGA 
    AAGAATTAAT TGTTCTCATG TGGTTATAAA GATAAACAGA TTGTTTTGGC 
    AGTT

    Gene models with high sequence identity

    1. AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
      E-value: 2e-109; Score: 393.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G29050.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 38
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR