K32932

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32932

Determination of introduced cDNA(s)

  • J023093M09 - Rice Full-length cDNAs - Original: J023093M09

    full reading [+] show sequence

    Nucleotide sequence: J023093M09 - full reading 
    GCGTGGCAAG CAGAAGTGCA GAACCCTCGC CGCCGCCGCC GCCGCCGCCG 
    CCACCGACTA CCCATCGACG GTATGTATTT CTCTATCTCT GTTATTTTTT 
    TTCTCTCCTC GCTCGTACTG TGGATAAAGC GGATCCAATC CATGACATTT 
    GGGTGATTTG TAGTGGGTGC TAGTATCGAT CCCTTTCGTG GATTCTGGGT 
    GCTACTGGTT ATCGTTAGGT TTTTTTAGGG GAACATTTCT AGCTTCTTTG 
    TAATTTTTTT TTGAACCTGT TAGGAGTTTT GGCTTCCAGT TCAGTCTGGA 
    ATTTTTTTTT TCATTCTTGA ACATTTCACA CACAAGGAAC CACGGTATGT 
    CTTAGCTTCA ATTTAGGGGC CTTTTGACAC CACAGTGTGT CATAAAGTTG 
    ATATGGATAT ATATCCCCTC AAAGTAACTT AGTTGATTGA ACTTAATAGC 
    AGTGAAATGC TAACGTGTGT TGTTTCTTGT ATGTGCATCT GAAAGTTATT 
    GCATGTCCCA AATTTTCTTT GTTTGAACCA AATAGCAGGG GAAAGAGCCA 
    TTCATTAGGA AATACTGAGA TTGACTTTGA CATGTAAATT CAGGATTATT 
    ATTATTTTTA ATTTAATGTG CACAAAATGC TAGCTCATTC TTTGAAGAAG 
    CAATTTGCAG CCCGTTGCAC ATGCACACTA TTTATGCTAT GGAAGAAAAG 
    AAAGGTAGGA TTCAAAAGAG AAGATGCCTA CCTGATACAA TCTTCCTAGA 
    GTAAAGTTGT CATTTCCTGC TTGTGGTATT GTTAGCAAGT CCTGCAAGTC 
    TCAAATGTCA AGACAGCTGC GTCAGTGTTA TCAGCTACAT TTTGTTGATT 
    TGCTGCTGCT TTTAGAATTT CAGTGATGTA TTCTTATGGA GAAAGGTGAT 
    TTCTCCTTGC TTATTTTTTT CTTGTGGAGA ACAGTTCTCA CCTTTTTTTC 
    CCTGTGATAT TCTCGGGGTT TTAGCCTTTT CACCCTGGAA TCTCTTTAAC 
    TCTTGGATGT TGCAAAAGCA ATGGCAGTGC GATATATCTC TAAGTCTTCG 
    TTTGCTTTTT TTTGTACAGT CAGAAATTCA AATCCCCCCT GTGGCAGTTT 
    GAACGTGTAG TATTTTCTTC CATCAATCCT TTTATAAGTG AAATGCTTCT 
    TGTTTCAAAA TTTAAACAAT TTCCAGCATT TTGGCCTGGA AGAAGAAAGG 
    TTTCATCCAC AGGCAAGATG TCTACCTGAT ACAATCTCTC TAAAATAAAA 
    TTTCCATTTC ATGCTGTCAT GGTGTTAGGA TGTTTTACAG GTTTAATCAG 
    TCCAATAAAC CCCCTTAATA CCATATCTGA TAAGCATATG TTCACCTGAC 
    CTATAGTTCC TAAGGTTCAA CTCAAATTGC GGTAAGCCCT AATTAACAGT 
    GGTAGGAACA TTAAGGTAAC TAATTTTCCA TGGATCCTTC AACACTGTAA 
    ACCGTGATTT AGATGCCCAT TCTATGTCAC ATTTTCACTT TCTGTACTAT 
    GTAATACTAT ATATACATAT GGAAGGTAAA AACTCAGCAA CTTTAGCACT 
    ACATAATGGA AGTTCCTGAA TTTTGGCAGT AATTGTTGTA GCTACTGCGT 
    ACTGAATCAG TTCTTTACTA AAAGGCTAAT GATGAGAACT TGTGGACAAC 
    TGAAGTTTCA TGCAAAAATT GTGAACTAGT TCACTATCCC ATGCTTTCCC 
    TAGTTTCATG TGACATAATA TCCGTCTGCA GTGGTGAAGC TTCATGGAGG 
    CCAGAGTGGG TTTGGCCCCC TCCAGTTCCA TACAAATTAC ACTATGTTAG 
    TGTATGGTAT ATTCATAGGT TTTCATTAGC TGTCTTTGAC AACTATTGAT 
    GCATAACCCA TGTTAACACC CCCTTCTTAA CAGTCTGTGA AGCTCTGCCA 
    TCTCACCGTC TGATGTCGAT GCACATTGTA TGCTATGTGC TATGTTTACG 
    ACTTTATGTA GTCCTGACTT TATTATAGTC TGAAACATCA ATTATTGGTT 
    CTCTTTATTC ATCCTCGCCA TCTGGATGTG CTTTTGGCTA ATCCTCTTTT 
    TATTTTTCTT GGCTTGCAAA GCTGCTTAAT TGGCCGATAT GGTTATCCCT 
    CCTCCAGCTA GGGCTCCTGC AATCACCAAG TTCCTGAAGC CCTATGTTCT 
    CAAGATGCAT TTCACAAACA ACTTTGTGAG CGCCCAGGTC ATCCACACCC 
    CATCTGCCAC GGTTGCATGC TCGGCGAGTT CACAGGAGAA GCTTCTTAGG 
    CCAAGCATGG AGTCCACACG TGATGTCGCC GCGGCGGCGA AGATCGGGAA 
    GCTGCTTGGC GAGCGCCTGC TGTTCAGAGG CATTCCTGCG GTGTCGGTCT 
    CCATGTCAAG GGACCAGACG TACCATGGCA AGGTCAGGGC CGTCATGGAT 
    TCTCTTAGAG CCGCCGGTGT GAAGTTGCTG TGATGGAAGC CGACCATTTG 
    TAGCATCTCT GCTTGCAGTT TCTGACATGT AAATATGTTT TGTTGGGTAC 
    GTACTGCCGT CCTCTGAAAT TTCATTTTAG CTTGCATAAT GTCGTCC

    Gene models with high sequence identity

    1. AT5G27820.1 [+] show detail - Ribosomal L18p/L5e family protein
      E-value: 7e-41; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Translational machinery components 5.8e-21
    HMMPfam Ribosomal protein L18/L5 5.4e-16
    Gene3D no description 2.7e-12

    See the detailed result >

    AT5G27820.1

    Model type
    Protein coding
    Short Description
    Ribosomal L18p/L5e family protein
    Computational Description
    Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR