K32941

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32941

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32941

Determination of introduced cDNA(s)

  • J033115I05 - Rice Full-length cDNAs - Original: J033115I05

    full reading [+] show sequence

    Nucleotide sequence: J033115I05 - full reading 
    GAGCGTGATC CGACCCAAAT CTAATCTAAA CCCGTCCCCG TGGATTACGC 
    ATCATTACCC CGCATCTGCT CGTGGATTTT ATTAGCTTCT CCTCTCGCTA 
    CGTTTGGGGT TTGGTTTTTG ATGGGCTAAT TATTAGCGGT GGTGGAACCT 
    GAAAAGTCGC GTGTTTTGTG CTTTGCGTTT TGCTCGCTTG CCGTGTGTAG 
    CGGTGGACTG GTGGCGTCGT TCGTGTCGCG CACCTTTTCT CTTTTTTTTT 
    CTTCACCGGG ACCAACTGGG GAAGAAAGAT TTGGGGGGTT TTTGGCCGTT 
    TCGGCGTCTC ATCTTTCTTC TCGCCGCGCG CGCTCGTGTC CAGTCGCCGC 
    CGTAGTTGTA CGAGCGCTAT CCTTGAGCTT TGGCTGCACG GGATTCATTG 
    CAAGGGATGC GGTGGCCAGC GTCGTAACTT GCTCGTTTCA GATCGTGACG 
    CTGTGGGGTT CTCTTTTTCA GTTACTGCTG CTACTGCCGG TACCGGCTGC 
    CGAGGAGGGG AATGAGGATG AAGACGCTGG CGTGCTGCCG GCGGCGGCCG 
    CAGGACTTCA GCATCGACAT GGACCAGGAG CCTGACAGGG TGATGACGTA 
    CAATGGCCTT GAGAGCTGTA TTATCAACAG TTCCTCTTAT GACGATGATA 
    GTGGCCTTAG TGCAACAACG GGAGCAGATG GGTGTGTAAC CACTGATTCC 
    GTTGATGATG AAGTCTCAAG TTGCTCCTCA AGTAAAGATG TTTCTAGCTC 
    TTCGTTCTCT TCACAATGCC ATCCACTGAG AAAGCAAGAG GAGCATTCAC 
    TTTACGAGTT GGATACACTC AGTGCTGTCC ATCTACTTCC TCTCAAAGGG 
    AAGAAGCCAA TCACGTATAC CTTGAGTGCT TCAGACATTG AAACCATGAA 
    GGAGAAGTTT GGGAAGCTAC TGCTTGGTGA TGATGCTTCA GGAGGAGCTA 
    GAGGTGTTTG TGCTGCTCTG GCTTTGTCCA ATGCCATTAT TAATCTCTCA 
    GCCACTATAT TTGGAGAACT CTGGAAGCTG GAACCACTCT GTGAAGAGAA 
    AAAAGTCAGG TGGCGGAAGG AAATGGACTG GTTGCTTTCT CCTACAACCT 
    ACATGGTTGA GCTGGTTCCT ACAAAACAAA ATGGAGCAGA CGGGTGCACG 
    TTTGAGATTA TGACCCCGAA AGCACGTTCA GATGTTAATG TGAACCTTCC 
    TGCCCTTCAG AAGCTTGATT CCATGCTAAT TGAAGTGCTG GACTCGATGG 
    TAGACACAGA GTATTGGTAT GTGGAGAGTG GTAGCCGAGC TAATGGCCGG 
    GGCAAAAAGA ATGGTCTGAG GCAGACGAAG AAGTGGTGGC TCCCATCACC 
    TCGTGTGCCA GATATAGGGT TGTCTCAATT TCAGAGAAAT AGGCTTGTTT 
    TTCAGGCTAA GCTGGTTCAT CAAATCCTCA AAGCTGCGAT GTCAATCAAT 
    GAAGAAGTCC TGCTTCAGAT ACCTATTCCT CCAGCTGTCA CGGATGCTCT 
    TCCTAAGTCT GGCAGAGCTG GCTTGGGTGA AGACTTGTAC CATGCTATAA 
    CCACAGAGTA CATTCCCATA GAGGAAATTT TCCTCTCTCT TAGTTTAAAA 
    ACGGAGCATA CCGTGCTCGA GACTATGAAC CGGTTGGAGG GTGCAGTTTT 
    TGCATGGAAT CAAAGGATCT CAGAGGAAAA GAGCAAGAAA TCCCCAGGAA 
    GGCATTCCTG GAATTTCATG AAGGATAGTT CATCAGAACT CGATAAGATG 
    TCCATGTGCA TAGAAAGGGT TGAAACACTT ATGCAGCTTC TGAAATCCAG 
    ATTCCCGAGC CTTCCTCCAA CTTTTATAGA AGTTGTAAAG ATCCAATACA 
    ATGTGGACGT GGGGCATGCC ATTGTGGAGG CCTACTCAAG GGTTCTTGTT 
    GGGGTGGCAT TCAGCATACT GTCCAGGGTA GCAGAGATTC TGCTGGAAGA 
    TGACCTGATC AAGAAGCCCA ACACCCCTCT GGCCACACTC AAGTTCGACC 
    TCTCCTCCGA CGTGTACCTC GCCGGCATCA CCGAGACGCC GCCGGGCCAC 
    ATCCGGCGGT CGCTGATGGA CCAGATCAGC CTGGTCGACG GCAGCCTCGA 
    CGCGGTCGTC AGGAAGAAGG GGGTGAAGCA GCTTAGGTGG TGAAAAAGGA 
    CATGAAGCTG TGAAGTTTTT CTTTTTGGCA GTTGTACAGG GTTTGTGATG 
    ATGATGCATG CTGTGCTGCG CGCTGGCTGG CTACATAAAG TTGGTTAAGT 
    TCACCTTGCT AATACGTCCT GTATGGAACG GGCTAAATAG TGTATGCATG 
    GTAAAAGCTA CTAGC

    Gene models with high sequence identity

    1. AT1G31650.1 [+] show detail - RHO guanyl-nucleotide exchange factor 14
      E-value: 5e-131; Score: 465.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rop nucleotide exchanger, PRONE 3.7e-138
    ProfileScan Rop nucleotide exchanger, PRONE 98.521

    See the detailed result >

    AT1G31650.1

    Model type
    Protein coding
    Short Description
    RHO guanyl-nucleotide exchange factor 14
    Curator Summary
    Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
    Computational Description
    RHO guanyl-nucleotide exchange factor 14 (ROPGEF14); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 302 Blast hits to 301 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR