K32944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32944

Determination of introduced cDNA(s)

  • J013063A11 - Rice Full-length cDNAs - Original: J013063A11

    full reading [+] show sequence

    Nucleotide sequence: J013063A11 - full reading
    GGCCTCCCCC CACAGCGGAA GAAGATTCCA ACGAGAAGGC GAGCGAGAGA 
    GAGGAGAAGA AACCAAGAGA GCGAGGGCGG AGGAAGCAGT CGAGCTCTCC
    CAGCCTCGGC GGCTAAACTC CCCCCCCCCC TCGCTTTCTT CCCCTCCTTC
    CTCAATCTCC AAGCCTCGAT ATCCGTGTTC TTCTCTGACC GAATCCGAAT
    CCCGCGTTTC TTTGTTGCGC GCGCGACCGC CCGCGGGAAT CTTGGTGGTT
    CTTGGGCGAT CGTGATGGCA TTGGATGGCG GCGGCGAGGT TGGCAGGAGG
    AGGAGGAGGA GGGGATGGGG AGGCGGGTTC CCGAGCCTGA TGCGGCGGAA
    GCAGGTGGAC TCCGACCGGG TCCGCGCCGC CGAGGGGGAA GGGCAACCCC
    AGCTCGCCAA GGAGCTTAAC ATCCCGGCGC TGGTCGCGAT CGGTGTCGGT
    TCAACAATTG GAGCTGGGGT ATATGTTCTT GTCGGAACAG TTGCTAGGGA
    GCATGCTGGT CCAGCATTGA CAATTTCATT TCTGATAGCT GGAATAGCTT
    CCGCGCTCTC AGCCTTCTGT TATGCCGAGC TTGCTAGTCG GTGCCCATCT
    GCTGGAAGCG CCTACCATTA TTCATACATC TGCGTTGGTG AAGGTGTTGC
    CTGGTTGATT GGTTGGGCTT TAGTGCTGGA ATATACTATT GGTGGATCTG
    CTGTTGCCCG TGGCATATCC CCCAATCTTG CCTTGTTCTT TGGAGGACCA
    GACAGTCTTC CATGGATTTT ATCACGCCAC CAGCTTCCAT GGTTTGATGT
    CATTGTTGAT CCCTGTGCCG CTGCCCTCGT TTTTGTTGTT ACTGTTTTGC
    TATGTGTTGG GATAAAAGAG AGTTCAGCTG TACAAGAGCT TATAACAGTT
    CTGAATGCTT GTGTGATGAT ATTTGTTATT GTAGCTGGTA GTTATATCGG
    CTTCCAGATA GGATGGGTTG GCTATAAAGT TACTGATGGA TATTTTCCAC
    ATGGGATAAA TGGAATGCTT GCTGGATCAG CAACTGTTTT CTTTGCATAT
    ATTGGCTTTG ATACAGTTGC TAGTACTGCT GAGGAGGTGA AGAATCCACA
    GAGAGATCTA CCACTGGGAA TAGGAGCGGC ATTGTCTATC TGCTGTTGCT
    TGTACATGAT GGTTTCTGTT GTTATTGTTG GGCTGGTACC ATATTTCGCT
    ATGGACCCAG ATACGCCCAT TTCATCTGTC TTTGCGAAAC ATGGAATGCA
    GTGGGCCATG TATATTGTGA CAAGTGGTGC TGTTCTTGCA CTTTGTTCAA
    CTTTGTTGGG GTCACTTCTT CCGCAGCCTA GAATACTAAT GGCGATGGCA
    CGAGACGGGC TGCTGCCATC TTTCTTCGCC GATGTTAACA AGAGGACACA
    AGTTCCTGTA AAGAGCACAG TCGTGACTGG TCTCTGTGCA GCAGCTCTGG
    CTTTTTTCAT GGATGTTTCC CAGCTGGCAG GAATGGTCAG TGTAGGTACA
    CTCCTTGCAT TCACCATAGT TGCTGTCTCG ATCTTAATAC TCAGATATAT
    TCCTCCGGAT GAGGTTCCTC TGCCTTCATC TCTGCAAGAA ACATTCTGTT
    TGAGCCAAGA ATATGATGAG GAAAGGGTTA GCGGTATTCT TGGAGATGAG
    AGATGCAAAA CATCTGAAAC AAAGGATGTG ATTCTCGCAG AATCTATGGA
    GGATCCTCTC ATTGAGAAGA AAATAACAAG AAAGATGGAC GAGATGAAGC
    GTCGGAAGGT GGCCGCTTTC AGCATAGGAT CTGTTTGTGT TGGAGTTATG
    GTTCTCACAT CCGCAGCTTC TGCCACATGG CTGCCTTTTC TTCCTATGTG
    TATTGGCTGC ATCGTTGGCG CTCTGTTGCT TGTAGCCGGT CTTGGCCTCC
    TCTGCTGGAT CGACCAAGAT GATGGCAGGC ATTCTTTCGG CCAATCTGGA
    GGATTTACAT GCCCTTTCGT TCCACTTCTG CCAGTCTTGT CTATCCTCGT
    AAACACATAC CTGTTGATAA ATCTGGGTGG AGAGGCATGG ATGAGAGTAG
    GCATATGGCT GCTGATAGGC GTCTTGGTGT ACATTTTGTA CGGACGAACT
    AACAGCTCCT TGAAGGATGT CATCTACGTC CCCGTAGCGC AGGCCGATGA
    GATATACAAG AGTTCATCTG GATATGTGTC CTAGAAAAAA ATATTTTTTA
    GTTTGCACTA TTCTTCAGTG ACAACATGCC TCACCTGTCT GCAATTGGAA
    GATTAGCCTG GACAGAGGAG ATGCTAAATC ATTCATACTT GGGGAAAAAA
    CATGGATGCA ATATTATATT TAGGATGTGC ATAGGTGTAT ATATAAACCC
    AATTGGACAG TGGAATACAT GATTTTGTGT ATATAAGCCC TTTGTACTAA
    ATGGTAAACT GAAAAGCGGT TATCGATGAA AAAAAAGTGC AATAGACGAA
    GTACT

    Gene models with high sequence identity

    1. AT1G58030.1 [+] show detail - cationic amino acid transporter 2
      E-value: 0; Score: 743.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid permease domain 1.2e-39
    HMMPanther Cationic amino acid transporter 9.3e-238
    HMMPanther Amino acid/polyamine transporter I 9.3e-238

    See the detailed result >

    AT1G58030.1

    Model type
    Protein coding
    Short Description
    cationic amino acid transporter 2
    Curator Summary
    Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.
    Computational Description
    cationic amino acid transporter 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 3 (TAIR:AT5G36940.1); Has 37076 Blast hits to 34712 proteins in 2307 species: Archae - 552; Bacteria - 29543; Metazoa - 2357; Fungi - 2838; Plants - 508; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR