K33004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33004

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33004

Determination of introduced cDNA(s)

  • J013027N14 - Rice Full-length cDNAs - Original: J013027N14

    full reading [+] show sequence

    Nucleotide sequence: J013027N14 - full reading 
    GGTCGTCCAC GCCTCCGCTC CCCCTTCCTC CTCCTCCTCC CCTCCTCCCC 
    TCGCAAACGC AACCTTCTCT CGCCGAAGAG GGAGAAGGGA AAAGGGGTTT 
    CGATTTCTCC GCGATTTCCC CGCGGATTCC TCCCCCCACC GCCTCCGGCT 
    CCGGCGACTT GCTCCGCTCC CACGTCGGCG GCGCATCCAA GATTGGTGAT 
    CCAAATTTTG AGGTGCGCGA GCGTGTTCGC TATACAAGAG ATCAACTTCT 
    CGAACTGCGT GAGATCGTTG ACATACCTGA GGCCATCTTA AGAATTAATC 
    AAGAGATTGA TATAGAGCTT CATGGTGAAG ATCAGATTTG GGGTCGCCCT 
    GAGTCAGATG TGCAAGTGCA GACACAAACC CAGGCGCAAC CGCACAATCG 
    GTATGGTGAG ACAGATAACC GTGACTGGCG TGCACGCACG GTTCAACCTC 
    CGGCAGCTAA TGAAGAGAAG TCCTGGGACA ACATTCGTGA AGCTAAAGCA 
    GCACATGCTT CAAGTGGTCG GCAACAAGAG CAAGTTAACA GGCAGGATCA 
    ATTAAACCAC CAGTTTGCTT CAAAAGCTCA GGTTGGCCCG ACTCCTGCTC 
    TTATCAAGGC TGAGGTACCT TGGTCAGCTA GAAGAGGCAA TCTCTCAGAG 
    AAAGATAGAG TCCTGAAAAC AGTGAAAGGT ATACTAAACA AACTGACACC 
    GGAGAAATTT GATCTACTCA AGGGCCAACT AATGGAATCT GGAATTACCA 
    CTGCTGATAT TCTAAAGGAT GTTATTTCTC TCATATTTGA GAAGGCTGTT 
    TTTGAGCCCA CCTTCTGTCC GATGTATGCT CAACTTTGTT CCGATCTCAA 
    TGAGAAGCTA CCATCATTCC CTTCGGAAGA ACCAGGTGGC AAAGAGATTA 
    CATTCAAGCG TGTGCTGTTG AACAATTGTC AGGAAGCATT TGAAGGTGCT 
    GAGAGCCTAA GGGCTGAAAT AGCAAAATTG ACTGGCCCTG ACCAAGAGAT 
    GGAGAGAAGG GACAAAGAAA GGATTGTCAA ACTAAGAACA CTTGGAAATA 
    TCCGTCTAAT TGGTGAGCTA CTTAAGCAAA AGATGGTACC TGAAAAGATA 
    GTTCATCACA TTGTTCAGGA ACTCTTGGGG TCTGGACCTG ATAAAAAGGC 
    TTGCCCTGAA GAGGAAAACG TTGAGGCTAT TTGTCAGTTC TTCAATACAA 
    TTGGTAAACA GCTTGACGAG AACCCAAAAT CTCGTCGAAT TAATGATACC 
    TACTTCATTC AGATGAAGGA GTTAACAACA AACCTTCAGT TGGCACCACG 
    TCTGAGGTTT ATGGTTCGTG ATGTGGTTGA TCTTCGTTCA AACAATTGGG 
    TGCCTCGACG TGAAGAGATT AAGGCCAAGA CAATCAGTGA AATTCATGAT 
    GAGGCTATGA AGACACTTGG ACTACGGCCA GGGGCAACAG GACTCACGAG 
    GAATGGCCGT AATGCACCAG GTGGTCCTCT TTCCCCTGGT GGATTCCCAA 
    TGAATCGACC AGGAACAGGA GGGATGATGC CTGGGATGCC TGGAACACCT 
    GGTATGCCTG GATCAAGAAA GATGCCTGGA ATGCCTGGGT TAGATAATGA 
    TAACTGGGAA GTTCCACGTT CTAAATCAAT GCCAAGAGGC GACTCTCTTC 
    GTAACCAGGG TCCGTTGCTT AATAAGCCAT CATCTATTAA CAAGCCATCA 
    TCTATTAACT CCAGGCTTCT TCCTCATGGA AGTGGAGCAC TAATTGGTAA 
    GAGTGCTCTT TTGGGCAGTG GTGGTCCACC ATCTCGCCCT TCCAGCCTTA 
    TGGCTAGTCT CACTCATACA CCAGCTCAAA CTGCACCATC ACCAAAACCT 
    GTAAGTGCAG CTCCAGCTGT TGTGCCTGTC ACAGACAAAG CAGCCGGTTC 
    TTCCCATGAG ATGCCAGCTG CAGTTCAGAA GAAGACGGTA TCCCTTCTTG 
    AAGAGTATTT TGGCATACGT ATTCTGGATG AAGCACAACA ATGTATCGAG 
    GAGCTTCAGT GTCCTGAGTA CTACTCTGAG ATTGTGAAAG AAGCTATCAA 
    TCTTGCTTTG GATAAGGGTC CCAACTTCAT TGATCCTCTT GTTAGGCTGC 
    TGGAGCATCT GCACGCCAAG AAAATTTTCA AGACTGAGGA CCTGAAAACT 
    GGATGCTTAC TGTATGCAGC CCTGCTGGAA GATATTGGTA TTGACCTTCC 
    TCTAGCTCCA GCCTTGTTTG GTGAAGTTGT TGCACGACTG AGTTTGTCGT 
    GTGGCTTGAG CTTTGAAGTT GTTGAGGAGA TTCTAAAAGC AGTGGAGGAT 
    ACATACTTCC GCAAAGGAAT TTTTGATGCT GTCATGAAAA CCATGGGCGG 
    AAACTCTTCA GGTCAGGCTA TATTGAGCTC GCATGCTGTG GTAATCGACG 
    CCTGCAACAA ACTTTTGAAA TAATAGCCCC TTGGCAGCCT TGGCATATCA 
    ACCTTTTGGA TGCTGTGCCT AGCCAAAACA GCATCGTGTA TTCTCTATAG 
    CTTAGGTGTT TCACCCCAGA GGAACTCTCG TACTGGAGAT GTGAGCAACA 
    GCCAGTTTTG TGCTGTATAT TTTTGCAAGG TCAGATGAGT GTTCATTATT 
    GTTTCGACAA CGAAGGAAAG AAAGAAGCCA TGGATTTTGC TATCGGGTGA 
    CAGCTTAATT CGCTGGAGCC TGAGATGAAC AAGGCTTAAT GTGGTATTTT 
    TGTGTCCCTT TATTAGTTCT TTTCTGTGCG TACACATTTT GTAACAATGT 
    ACTATGGTTT TGGAGTATTC TGTTGGTTTA CAATATATCG TGTCATTGTA 
    GCGGTCAAAT TTTGATACCT AATTCTGAGG TTTGCTTGAG CATTCGTGCC 
    TCGTGTGCGA TGAAGTTTTA TCATTTTCCT CAGAATTACT TGCTGATGCA 
    TTTGACT

    Gene models with high sequence identity

    1. AT5G57870.2 [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
      E-value: 0; Score: 755.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Initiation factor eIF-4 gamma, MA3 19.796
    HMMPfam MIF4G-like, type 3 1.3e-58
    HMMPfam Initiation factor eIF-4 gamma, MA3 2.2e-20
    HMMPanther EUKARYOTIC INITIATION FACTOR 4F-RELATED 0
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GA 0
    Gene3D MIF4-like, type 1/2/3 8.5e-73
    superfamily Armadillo-type fold 8.2e-71
    HMMSmart MIF4G-like, type 3 4.9e-55
    HMMSmart Initiation factor eIF-4 gamma, MA3 1.5e-26

    See the detailed result >

    AT5G57870.2

    Model type
    Protein coding
    Short Description
    MIF4G domain-containing protein / MA3 domain-containing protein
    Curator Summary
    Encodes a putative eukaryotic translation initiation factor.
    Computational Description
    eukaryotic translation Initiation Factor isoform 4G1 (eIFiso4G1); FUNCTIONS IN: RNA binding, binding, translation initiation factor activity; INVOLVED IN: translational initiation, translation, RNA metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 2168 Blast hits to 1785 proteins in 242 species: Archae - 0; Bacteria - 22; Metazoa - 1155; Fungi - 192; Plants - 508; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR