K33009

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33009

Determination of introduced cDNA(s)

  • J013165K20 - Rice Full-length cDNAs - Original: J013165K20

    full reading [+] show sequence

    Nucleotide sequence: J013165K20 - full reading
    GAATCGAAAC CGTCCGCATC TGACAGTGAA GGAAAGAGAA CAGAGGCCAT 
    GGCGTCTCTC CCGGTGCCAA GCGTGCAGGC CATGGTGGCG GCCATCGGCA
    TCGACCATGT TCCACCCAGA TACCTCCGCC CCACGGACGC CGACGAGCCG
    GTCGCTTCTG ACGGCGGCGA GGCGGAGATC CCCGTCGTCG ACTTCTGGAG
    GCTGCAGCTC GGCGACGGCG ACGAGCTGGC TCGCCTCCAC ATTGCCTGCC
    AGGACTGGGG CTTCTTCCAG CTGGTAAACC ACAATGTTCC AGAGGATGTG
    GTGGAGGGGA TGAAGGCCAG CATCAAGGGA TTCTTCGAGC TGCCTGCGGA
    GACCAAGAAG CAGGTCGTTC AGGAGCCAGG GCAGCTGGAA GGCTACGGTC
    AGCTGTTCGT TGTGTCTGAA GATCAGAAGC TCGACTGGGC TGACATCCTC
    TACGTGAAAA CGCAGCCGTT GCAGGACAGG AACCTCAGAT TCTGGCCTGA
    CCAACCTGCC GGCTTCAGAA TGGCACTGGA CAGATACTGC GCGGCTGTGA
    AGATCACAGC GGATGGCCTT CTGGCTGCCA TGGCGACCAA CCTGGGAGTG
    GAGTCGGAGG TGATCGCAGA GAGATGGGTG GGTGGAGTCC AGTCGGTGAG
    GGTGCAGTAC TACCCTCCGT GCGGTCAGGC GGACAAAGTA GTCGGCATCT
    CTCCTCACTC TGATGCTGAT CTGGTGACCA TTCTCCTCCA AGCGAACGAG
    GTGGATGGCC TGCAGATCAG GAGAGGCGGG GCTTGGCTTC CCGTCAGGCC
    TCTGGAGGGC GCTCTCATCG TCAACGTGGG AGACATTCGT CAGGTCTTCA
    CTAATGGGAG GTACGAGAGC GTCGAGCACC GGGTTGTTGT GGATGGGAAG
    AAAGAGCGGC TGTCGATGGC GACCTTCCAT TCTCCAAGCA AAAACGCCAT
    TGTAGGTCCT CTGAGCGAGA TGGTGGAGCA TGAAGACGAT GCTGCTTATA
    CAAGCATGGA CCATGACGAA CTTCTGAAGC TCTTCTTCGC CAAGAAGCTG
    GAGGGGAAGA ACTTCTTGAA CCCGATAAAG AAGCTGAAGA ACAGCGGCTG
    ACCAAAGGAG TGGAAAGGAG ACTTGCTCTG CTTGCAACAT GTGTCTGTCC
    AAAACAGGAC ATGTCCTTCA CTTTTTTAAA CACGTAGTTA TCAAATTGTT
    TGAAAAATTA AATAAGATTT GTACAGTATA TATCTATTGT CCGAGTTGTT
    TTAGTAGACA GTCAAATGAT TCTTTAAATA CTCAATGTAA TATTTGTGGT
    AGAGGTTGAG ACTTTACTAA AATCAGTAGG ATGTTGATAT GTAACATGTG
    TTTCACTTAT TGTTCGATGC AACATCTTCA AATAAGGAGT AAAATATAAT
    TGTCT

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 4e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.8e-94
    superfamily Clavaminate synthase-like 8.7e-94
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 4.1e-136
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 4.1e-136
    HMMPfam Oxoglutarate/iron-dependent oxygenase 2.1e-24

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR