K33012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33012

Determination of introduced cDNA(s)

  • J033057F03 - Rice Full-length cDNAs - Original: J033057F03

    full reading [+] show sequence

    Nucleotide sequence: J033057F03 - full reading
    GTGGGGTTTC CTCGCCGTTG CCGTCGCCGT CGCCGTCGCC GCTGCCGCTT 
    CCGCTTGCGT GCCCTCGTCG CCGTCGAATC GCTCGCCCGT CGGTCGGGTC
    CGGTGACCTC GCTGCCTCCG AGATCCTCCT CTCCTCGCCT GCGCGCTCTT
    CCCGTCGGCT AGAAGGGCTG CTTCTTCCGT CCCGGCTCCG TCGCCATCCC
    CCCGCCGGCG GCGACTTGGG CGGCCTCGGC TACTTCGCCC TTGTTTTCCG
    GCCAAGTTGA AGGTTCCGGT TCCGTTTCCG ATCCTCAGAT TTTGAGAAAA
    TGGATCCTGA AGATCTTACT GACTCTGAGG AAGATGAAGA TGATGACATG
    ATGTTTTTTA TCTTGCCTAC ACTATATCTT GTTTCTACTG GAAGCGAAGA
    GCCATGTCAT ACATCGAAGT TCAGTGGTGC AGAGTGGATT TGTGAAGTGC
    TTGAAGATGA CCGTGGTGAA GGCTATGCCA AATTTCGAAT GGAGCCTCAA
    ATTCTTCAGA AATTTTCAGA CCTTCTTAGG TCAAAGAATC TTTTGCGGAA
    TACAAGAGGC GTTTCTGTGG AAGAGCAAAT TGGCATGTTT ATTTATATGC
    TCTCTCGAAA TGCCAGCTTT CAGAAAATGA GTGATAGATT TGAGCACAGT
    AGGGAGACTA TCCATAGACA TATCAAGGCA TGCTTTGATG CAATCACCTC
    ATTGACAGAT GAGTTTGTCA AGCATCCTTC AACTGAGACT CATTGGAAAA
    TATCATCTGA TCCGCAATAT GGGCCTTATT TTAAGAACTG TATAGGGGCA
    ATCGATGGAG TTCATGTACC TATCACAATA TCAGACTATG AAGCAGCTCC
    ATATCGAAAT ATAGAAGATT CCCTTTCTCA AAATGTGATG CTGGCTTGTG
    ACTTTGATTT GAATTTTGTC CATGTGTGCA GTGGCCACGA AGGGTCTGCA
    TCCGACGCGG CAGTCCTATA TGCTGCTGTG GAGTCTGGAT TTGAAGTCCC
    AAGTAACAAG TATTATTTGG TTGATAGGGG TTATGCAAAC ACACCATCTT
    TTCTTGCTCC TTATAGAGAA GCTGCATACC ATATTGAAGA GGAGGAGCAG
    AGCAATTGTC AGCCAAGTGA CTACAAGGAG TTGTTCAACC TTCGTCACTC
    AAAGCTGCGC AACAACATAA AGCGTGCCAC AGCGCTATTG AAGATGAGGT
    TCCCAATTTT AAATGTCGCA ACATTCTATC AGATAGAAAC TCAAGCGAAA
    ATCCCAGCAG CAGCAGTGGT GCTGCACAAT ATAATGCAGG GCCAAAAAGA
    TGATGATGAT GATGATGGGT GGGCATTTAA CCAGGCAATG CCAGTTTCAT
    CCCGTAGAAC TGTAGTTTTA CCCAGTGGGG ATGATGCTTA TGGCAATGAT
    GTCGAAGAAC TGAACAACCA ATGTAGCATG GGTGATGCTT TGAGAGATTA
    TATTGCGAAG AAGATGTGGA CAGATTATGA AAGGAACAGG AGGTAGGTTT
    CCCTATTCTG AGGCCAAACA ACATATAGGT GAAAGGAAAG AGCTGCTCAT
    GTGTGATTTG TATCTTGAAT TCTGATGTTT ATGGTTAAAG ATGGAACTAG
    GCAATGCCCT GTAGAAGCTG TACTCAGTTG ACACCCACCA GTAAGATATG
    GCATTTTCAT GTCCTCCATT TGGCT

    Gene models with high sequence identity

    1. AT5G41980.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912);...
      E-value: 6e-51; Score: 199.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G41980.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR