K33027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33027

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33027

Determination of introduced cDNA(s)

  • J023004I01 - Rice Full-length cDNAs - Original: J023004I01

    full reading [+] show sequence

    Nucleotide sequence: J023004I01 - full reading
    GGCCGCGGGA GGGGAGGGAG ATCCCGCCGC CCCCCCAACC ACCACCGCCG 
    GCCACCTCGG ATCTCGGCTG CGTGCTGCGG CGGCGGAGGA GGCGGAGAAG
    GAAGGAGGAG AAGATGTTCT ATGGGGCGAT GGTGTGGGAT CCGTGGCTGA
    TCGTGTCGCA GATCGTGTGC CTGCAGTGCC TCTACTACCT CGCCCTGGGC
    CTCCTCATGG CGCTCCTCGT CGGCACCCGC GTCCCGCGCC TCACCCTCCT
    CTACCTCTTC GACTTCGCCA CGCTCACCCC GCGCACCACC ACCGGATGGT
    GCGTCATCGC CGCCTTCCTC CTCGCCGCCG CCGCCGGTGC TGCTTTCATG
    CTTTATGTGA TTGAGAGAGC TAAGAAGTGC CTGGACTTTG CAGCCACCCT
    CTACATCATT CATCTGTTTA TTTGCATTGT TTATGGTGGA TGGCCAGCTT
    CAGTTACATG GTGGGTTGTT AATATTGCTG GTTTGGCGAT TATGTCTCTT
    CTTGGTGAAT ACCTATGTAT AAGGCGGGAA TTAAAAGAAA TTCCAATATC
    ACGGCTTCGT GCAAGTGTTT AATCTTACAG ACTAAAGGAG TATAGATGGC
    CTTCAAATGT TGTTACCCCC CAAGAGATGC TTGTTAATAT GTTTCTTTAG
    GAATACAAAG ACTCGTGATA CATGCTTTCC TCTATGGTTT ACGACCAATA
    CTCTTCAAAC CTGCAAATTG ATGCATGATC TCCCAGTAAA GCCACCAGGT
    AGAGACTGAC AGAACAAATC AAGGGTTCTG AGACCAAGCA TAGAATGCCA
    ACTCAATTTT TAAAGCATGT ATCAACTATT CAAGTCTTCT CTTCTCTATG
    GATAGTCTCA TTGAATTGAC GAAAAAAGAG ATTACTTGAC AATTTGTATG
    GCTAGATACC AGCACCTTGA AACCTGTGTT CTTTAGCGAG GGTCTGTATC
    GCACCATTCG ATTCTTCTTT AGCTTTATCC TGCAGATAAT ATATCCAGTT
    TCCAGTGCTT CCTCTTAAGC TCATTCCAGC AGAGTTCAGT TTGGCGGCCA
    ATCACATGAC TACTCGAACC TCCAAATCAT GCTGTCCTTC TGAACATGTA
    TGTCAATATA TGTGCCCTGT GTGTATTGCG TCAGAGGTGT TGACATGAGT
    TGGTTAAAAA TACATGCTTG ATACGAAATT GTAATTTCCA TCGCAGGTGA
    ACTCGGGCAA AAATTTTAAA ATCCCTTGTG GGTTCGCACT TTTTTTTCCT
    CTAGTGCTGT GATACTTGCA GTAGTTTGTT TTATCCTTGC TAAGTATTGT
    GATATTGTCA GTACTACAGA AGCGCCTGTA ATCTCAGGTG TCAAAACCCA
    AAATCACTTC TTTCTCTTCT CTTCACTAAG GTTAAATATG CATTG

    Gene models with high sequence identity

    1. AT1G79990.4 [+] show detail - structural molecules
      E-value: 2e-45; Score: 180.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR12952 1.70000295590065e-53
    HMMPfam Integral membrane protein SYS1-related 8.39999999999997e-46

    See the detailed result >

    AT1G79990.4

    Model type
    Protein coding
    Short Description
    structural molecules
    Computational Description
    structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR