K33027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33027

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33027

Determination of introduced cDNA(s)

  • J023004I01 - Rice Full-length cDNAs - Original: J023004I01

    full reading [+] show sequence

    Nucleotide sequence: J023004I01 - full reading 
    GGCCGCGGGA GGGGAGGGAG ATCCCGCCGC CCCCCCAACC ACCACCGCCG 
    GCCACCTCGG ATCTCGGCTG CGTGCTGCGG CGGCGGAGGA GGCGGAGAAG 
    GAAGGAGGAG AAGATGTTCT ATGGGGCGAT GGTGTGGGAT CCGTGGCTGA 
    TCGTGTCGCA GATCGTGTGC CTGCAGTGCC TCTACTACCT CGCCCTGGGC 
    CTCCTCATGG CGCTCCTCGT CGGCACCCGC GTCCCGCGCC TCACCCTCCT 
    CTACCTCTTC GACTTCGCCA CGCTCACCCC GCGCACCACC ACCGGATGGT 
    GCGTCATCGC CGCCTTCCTC CTCGCCGCCG CCGCCGGTGC TGCTTTCATG 
    CTTTATGTGA TTGAGAGAGC TAAGAAGTGC CTGGACTTTG CAGCCACCCT 
    CTACATCATT CATCTGTTTA TTTGCATTGT TTATGGTGGA TGGCCAGCTT 
    CAGTTACATG GTGGGTTGTT AATATTGCTG GTTTGGCGAT TATGTCTCTT 
    CTTGGTGAAT ACCTATGTAT AAGGCGGGAA TTAAAAGAAA TTCCAATATC 
    ACGGCTTCGT GCAAGTGTTT AATCTTACAG ACTAAAGGAG TATAGATGGC 
    CTTCAAATGT TGTTACCCCC CAAGAGATGC TTGTTAATAT GTTTCTTTAG 
    GAATACAAAG ACTCGTGATA CATGCTTTCC TCTATGGTTT ACGACCAATA 
    CTCTTCAAAC CTGCAAATTG ATGCATGATC TCCCAGTAAA GCCACCAGGT 
    AGAGACTGAC AGAACAAATC AAGGGTTCTG AGACCAAGCA TAGAATGCCA 
    ACTCAATTTT TAAAGCATGT ATCAACTATT CAAGTCTTCT CTTCTCTATG 
    GATAGTCTCA TTGAATTGAC GAAAAAAGAG ATTACTTGAC AATTTGTATG 
    GCTAGATACC AGCACCTTGA AACCTGTGTT CTTTAGCGAG GGTCTGTATC 
    GCACCATTCG ATTCTTCTTT AGCTTTATCC TGCAGATAAT ATATCCAGTT 
    TCCAGTGCTT CCTCTTAAGC TCATTCCAGC AGAGTTCAGT TTGGCGGCCA 
    ATCACATGAC TACTCGAACC TCCAAATCAT GCTGTCCTTC TGAACATGTA 
    TGTCAATATA TGTGCCCTGT GTGTATTGCG TCAGAGGTGT TGACATGAGT 
    TGGTTAAAAA TACATGCTTG ATACGAAATT GTAATTTCCA TCGCAGGTGA 
    ACTCGGGCAA AAATTTTAAA ATCCCTTGTG GGTTCGCACT TTTTTTTCCT 
    CTAGTGCTGT GATACTTGCA GTAGTTTGTT TTATCCTTGC TAAGTATTGT 
    GATATTGTCA GTACTACAGA AGCGCCTGTA ATCTCAGGTG TCAAAACCCA 
    AAATCACTTC TTTCTCTTCT CTTCACTAAG GTTAAATATG CATTG

    Gene models with high sequence identity

    1. AT1G79990.4 [+] show detail - structural molecules
      E-value: 2e-45; Score: 180.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR12952 1.70000295590065e-53
    HMMPfam Integral membrane protein SYS1-related 8.39999999999997e-46

    See the detailed result >

    AT1G79990.4

    Model type
    Protein coding
    Short Description
    structural molecules
    Computational Description
    structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR