K33028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33028

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33028

Determination of introduced cDNA(s)

  • J013051N02 - Rice Full-length cDNAs - Original: J013051N02

    full reading [+] show sequence

    Nucleotide sequence: J013051N02 - full reading
    GAGTAGCAGT AGCAGCGGAG GGAGCGGCAC ACGATACGCG CCGCGCGGAT 
    CCCCTCCCTT CCCTCCTCTT CTTCCTCCGC CTTCGCCGCC GCCGCCGCCG
    CCGCCGATTA CTCGCTTCCG CCTCCGCCTC AACCCCGTTC GTCCCCAACC
    AACCAACCGC AGTCCAATCC AAGCGAATAC TAAGCTCACT TGAATTCGGT
    TGGTGCCTCG TCGTCATTCT GCCACCACTT GAGAGTTCCT TCATACACAC
    ACCACTCGCA GTCTCAGCAG CAGCAGCAGC AGCGCAGTCC GTAGCAAAGC
    TGCTGTTATC TTCCTACATG CGGATGCAGC CCAGCTAGCT AAGCTAGGTT
    AGCTGCTGCT GTTGGTCTTG GAGGCAAACT AGTGTAATAT GTGCCGTACC
    GCCTGCCTTT CTTCATCAAC CAAACCCCTG CCACCACTCA ACCCGGCCAA
    CCTCTTCGAG TCAGGCTGAT GATGGGAACC GCTCATCACA ACCAAACCGC
    CGGCTCTGCC CTCGGAGTCG GAGTCGGAGA TGCCAACGAC GCCGTGCCTG
    GGGCTGGGGG TGGGGGCTAC AGCGACCCGG ATGGCGGACC AATCTCCGGT
    GTGCAGCGGC CACCGCAGGT CTGCTGGGAG CGCTTCATCC AGAAGAAGAC
    TATCAAAGTC TTGCTAGTTG ATAGCGATGA CTCCACCAGG CAGGTGGTCA
    GTGCCCTGCT TCGTCACTGC ATGTATGAAG TCATCCCTGC TGAAAATGGC
    CAGCAAGCAT GGACATATCT AGAAGATATG CAAAACAGCA TTGATCTTGT
    TTTGACAGAG GTTGTTATGC CTGGTGTATC TGGAATTTCT CTATTGAGTA
    GGATCATGAA CCACAATATT TGCAAGAATA TTCCAGTGAT TATGATGTCT
    TCAAATGATG CTATGGGTAC AGTTTTTAAG TGTTTGTCAA AGGGCGCTGT
    TGACTTCTTA GTCAAGCCCA TACGTAAGAA TGAACTTAAG AACCTATGGC
    AGCATGTGTG GAGACGGTGC CACAGCTCCA GTGGCAGTGG AAGTGAAAGT
    GGCATTCAGA CACAAAAGTG TGCCAAATCA AAAAGTGGGG ATGAATCCAA
    TAATAACAAT GGCAGCAATG ACGATGATGA CGACGATGGT GTAATCATGG
    GACTTAATGC AAGAGATGGC AGTGATAACG GCAGTGGCAC TCAAGCGCAG
    AGCTCATGGA CAAAGCGCGC TGTTGAGATT GACAGTCCAC AGGCTATGTC
    TCCAGATCAA TTAGCTGATC CACCTGATAG CACTTGTGCA CAAGTGATCC
    ACCTGAAGTC AGATATATGC AGCAATAGAT GGTTACCATG TACAAGCAAC
    AAAAATTCCA AGAAACAAAA AGAAACTAAT GATGACTTCA AGGGGAAGGA
    CTTGGAAATA GGTTCTCCTA GAAATTTAAA CACAGCTTAT CAATCCTCTC
    CGAATGAGAG ATCCATCAAA CCAACAGATA GACGGAATGA ATATCCACTG
    CAAAACAATT CAAAGGAGGC AGCGATGGAA AATCTGGAGG AGTCAAGTGT
    TCGAGCTGCT GACTTAATTG GTTCGATGGC CAAAAACATG GATGCACAAC
    AGGCAGCAAG AGCCGCAAAT GCCCCTAATT GCTCCTCCAA AGTGCCAGAA
    GGGAAAGATA AGAACCGTGA TAATATTATG CCATCACTTG AATTAAGTTT
    GAAAAGGTCA AGATCGACTG GGGATGGTGC AAACGCAATC CAAGAGGAAC
    AACGGAATGT TTTGAGACGA TCAGATCTCT CGGCATTTAC GAGGTACCAT
    ACACCTGTGG CTTCCAATCA AGGTGGGACA GGATTCATGG GAAGCTGTTC
    GCTGCATGAT AATAGCTCAG AGGCTATGAA AACGGATTCT GCTTACAACA
    TGAAGTCAAA CTCAGATGCT GCACCAATAA AACAAGGTTC TAATGGTAGT
    AGCAATAACA ATGACATGGG TTCCACTACA AAGAACGTTG TGACAAAGCC
    TAGTACAAAT AAGGAGAGAG TAATGTCACC CTCAGCTGTT AAGGCTAATG
    GACACACATC AGCATTTCAT CCTGCACAGC ACTGGACGTC TCCAGCTAAT
    ACAACAGGAA AAGAAAAGAC TGATGAAGTG GCTAACAATG CAGCAAAGAG
    GGCTCAGCCT GGTGAAGTAC AGAGCAACCT CGTACAACAC CCTCGCCCAA
    TACTTCATTA TGTTCATTTC GATGTGTCAC GTGAGAATGG TGGATCCGGG
    GCCCCTCAAT GTGGTTCATC CAATGTATTT GATCCTCCTG TCGAAGGTCA
    TGCTGCCAAC TATGGTGTCA ATGGAAGCAA CTCAGGCAGT AACAATGGAA
    GCAATGGGCA GAATGGGAGT ACGACTGCTG TAGATGCTGA ACGGCCAAAT
    ATGGAGATCG CTAATGGCAC CATCAACAAA AGTGGACCTG GAGGTGGCAA
    TGGAAGTGGA AGCGGCAGTG GCAATGACAT GTATCTGAAA CGCTTCACTC
    AACGAGAGCA TAGAGTGGCT GCAGTGATCA AGTTTAGACA GAAAAGGAAA
    GAGCGCAACT TCGGAAAAAA GGTGCGGTAC CAGAGCAGAA AGAGGCTGGC
    CGAGCAGCGG CCAAGGGTCC GCGGACAGTT CGTGCGGCAA GCTGTGCAAG
    ACCAACAACA GCAGGGTGGT GGGCGCGAAG CGGCAGCGGA CAGATGACCT
    ACCTACCTAC CTACGCGATG GCTTTGGACT CCAAACAGCT AATTAACAGT
    TAGTAGACAA CAGATAATGA TTCTTCTTCC TTGGCCGATC GATCAACAAC
    ATCCCATGCA TCCGGCATCC CACCACCATT GATTCCATCA TATTTAGAGT
    CTGGAATAAA TAAGGAACTC CTATCCTATT TATCCCCTAT CTATATATGA
    AGATATGATA ATGGTGATCT GCGTTACTAC TAGTAGAAGA ATATGGTGTG
    GCTGACTCCA CTTCAGGTGG ACCTATAATA CTACTCCAGT AGTATGTGCC
    TGTGGAGTCA AGCTCGAACG TACTACTCCA TATTTAAGCA TGTCATGTAC
    TGCTACTATG AGACGAGAGT GCTCTGCCCT GTAGGGACAG CACTATTGTC
    AATGTCATGT GTTTGTTGGG TCACTGGTCT TCTTAGATTT GCGTCCATGT
    CTGGCAGCAG CACTCCACTG TAGTTGGCTC ACGCATGTTG TTGAAATGAG
    CCACATGCCT TGCCTTGAGA TAGAACTTGC TGTCACTGTT TCTCCTTAAT
    CTAAATATAC TGGAGTGGAG TATTTTATTA TCTATGATCT GTAATCAGGT
    GATTGACAAG GC

    Gene models with high sequence identity

    1. AT5G02810.1 [+] show detail - pseudo-response regulator 7
      E-value: 1e-99; Score: 362.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.8e-27
    HMMPanther SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) 4.2e-18
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 4.2e-18
    HMMPfam Signal transduction response regulator, receiver domain 4.6e-22
    HMMPfam CCT domain 6.8e-17
    superfamily CheY-like 4.9e-32
    HMMSmart Signal transduction response regulator, receiver domain 2.8e-27
    ProfileScan Signal transduction response regulator, receiver domain 29.932
    ProfileScan CCT domain 15.487

    See the detailed result >

    AT5G02810.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 7
    Curator Summary
    PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 7 (PRR7); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR