K33031

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33031

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33031

Determination of introduced cDNA(s)

  • J023053C07 - Rice Full-length cDNAs - Original: J023053C07

    full reading [+] show sequence

    Nucleotide sequence: J023053C07 - full reading 
    GTCCTCACAC ACATCCCAAA AACCAAAAAC CAAAAACCAA AAACCAAAAC 
    CTCTCCTCTT CCCTCTCCTT CTCTACCCTC TTCTTCGTCC TCCTCCATCC 
    GAGAGGCAGC AAGCCAGCAA CTGCACGAGC AACCACCCGT AGTCAGTGAC 
    CTAGGCGGCG GAGGGAGATC GGCCGGCGGC GAGCGACGAC GATGAAGTAC 
    GTGCTGGTGA CGGGCGGGGT GGTGAGCGGC CTCGGGAAGG GGGTGACGGC 
    GAGCAGCATC GGCGTCGTGC TCAAGGACTG CGGCCTCCGC GTCACCTCCA 
    TCAAGATCGA TCCTTACCTC AACACCGATG CTGGAACCAT GTCTCCATTC 
    GAGCACGGTG AAGTGTTTGT TTTGGACGAT GGTGGTGAGG TGGACTTGGA 
    CCTTGGAAAT TATGAGCGAT TTCTGGACAT CAAGTTGACT CGTGACAACA 
    ATATAACCAC GGGAAAGATC TATCAGGCTG TTATTGACAA GGAACGAAGA 
    GGAGACTACT TGGGAAAAAC TGTTCAGGTT GTACCACACA TTACGGATGA 
    AATACAGGAG TGGATTGAAC GTGTGGCAAT GAATCCAGTT GATGGCACAG 
    ATGAGCCAGC TGATGTTTGT GTAATAGAAC TTGGTGGCAC TATAGGGGAT 
    ATTGAATCAA TGCCTTTTAT TGAAGCATTA GGTCAATTTT CATACCGCGT 
    AGGGGCTGGA AACTTTTGCC TAGTTCATGT CAGTCTTGTA CCAGTTCTAA 
    ATGTAGTTGG TGAACAGAAA ACCAAACCTA CCCAACATAG TGTCCGTGGA 
    CTAAGAGGAC TTGGACTGAT ACCTGATATT TTAGCATGTC GCAGTACTCA 
    GCCACTTGAA GAAAATGTGA AAGTGAAACT CGCACAATTT TGCCACGTTC 
    CGATCTCAAA TATTGTCAAT CTTCACGATG TTACCAACAT CTGGCACATC 
    CCTTTGTTGC TTAGGGACCA GAAGGCTCAT GAATCTATTC TGAAAGTTTT 
    AGATCTTCAA TGTGTGGGAA AAGTGCCTCG AGCACCTAAG CTGACTGAAT 
    GGACTGAAAG AGCCAGCAAA TTCGACAAAC TGAAAACTCC TGTTAGGATT 
    GCCATGGTTG GAAAGTATAC TGGCCTATCA GACTCCTACT TGTCAGTTTT 
    GAAGGCTCTT CTGCATGCAT CGGTTGCTTT GGACAGAAAA CTTGTGGTGG 
    ATTGGGTTCC TTCCTGTGAT CTTGAAGATT CTGCAGCCAC AGAGACTCCT 
    GATGCATATG AAAAAGCTTG GGATCTACTA AAGGGTGCAC ATGGTGTACT 
    AGTTCCAGGA GGCTTTGGAG ATAGAGGGGT CCAGGGAAAA ATTCTTGCTG 
    CAAAATATGC GCGAGAAAAC AATGTTCCAT ATCTTGGTAT TTGCCTGGGC 
    ATGCAAATTG CAGTGATCGA ATTCGCCCGC TCTGTCATGA AGTTGCGTGG 
    TGCTAATAGT ACAGAGTTTG ATCCAGCTAC AACGACGCCA TGTGTTATTT 
    TCATGCCGGA GGGCTCTAAA ACCCATATGG GGGCAACAAT GCGCCTTGGA 
    TCAAGGAGGA CCTTCTTCCA GGCCAATACA TGCAAATCAG CTAAGCTGTA 
    TGGCAATGCA AGCTATGTAG ATGAAAGGCA CCGCCACCGA TATGAGGTGA 
    ATCCTGAAAT GGTTCCAGAA TTTGAGAAGG CAGGTCTCTC TTTTGTTGGC 
    AGGGATGAAA GCGGGACACG CATGGAGATA ATTGAGCTAC CAACTCATAG 
    GTTTTTTGTT GGCGCACAAT TTCATCCTGA ATTCAAGTCA AGACCTGGAA 
    AGCCATCCCC ACTTTTCATG GGATTAATAG CAGCTTCATC AGGACAGCTT 
    GACCATTTAC TTCAGCAGTC TTGCGGCGTT GTCAGCTCGC CAGTCAGACG 
    TGGCAACTAC TGCAACGGAG CCACGAAACA ACAGAAGCTA TACCAAAATG 
    GACATGTCAA GAACGGCCTG GTGAACGGCT GCTACTATGC AAACGGCAAC 
    AGCATTCTTC ATACTTAGCA GCATAGCTCT GCATCAGGCC ATTGCACTTG 
    AGAGATTTAC CTGCTTTGTT TTTTCTCCCT TTTTTTTGCG TGTTTTTTCT 
    CCTATTTTTT TTAGGGTTAT GGATTCGTCT CTCTGCTAAA CTAAGAAGAG 
    ATTGAAAGGG TCCTTAGCTC CAGCGACATG AAGAGCCATT TCCGATGTTT 
    TAAGGAGGGA GAAATGAGCA CTTGAGCTGT CGCATCAACG CAAAAATAGC 
    TAGGGTTTAC TAGTAGTGAA CTAGTTAATC TAATGCAATA TTATTATTTC 
    TTTTGTTTGT TCGTTTGCTT GCTTGATGCC TTATATTATA TTGAAGTTTA 
    AGGCTAGCTG GAGGTGTGTA GCTAGCTTGG TGGAGCCTGC ACATTTCATC 
    TGTTTGTACA TTGGAAAAGA ACCACTATTT TCTTAGTAAC TGAATTGATG 
    AATACACATT ATTTGG

    Gene models with high sequence identity

    1. AT3G12670.1 [+] show detail - CTP synthase family protein
      E-value: 0; Score: 812.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5e-116
    Gene3D no description 1.6e-93
    HAMAP CTP synthase 45.825
    ProfileScan Glutamine amidotransferase type 1 22.657
    superfamily P-loop containing nucleoside triphosphate hyd 3.1e-117
    superfamily Class I glutamine amidotransferase-like 1.7e-60
    HMMPanther CTP SYNTHASE 2.6e-244
    HMMPfam CTP synthase, N-terminal 1.1e-124
    HMMPfam Glutamine amidotransferase class-I, C-terminal 2.3e-57
    HMMTigr CTP synthase 0

    See the detailed result >

    AT3G12670.1

    Model type
    Protein coding
    Short Description
    CTP synthase family protein
    Computational Description
    embryo defective 2742 (emb2742); FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10841 Blast hits to 10805 proteins in 2914 species: Archae - 237; Bacteria - 5484; Metazoa - 258; Fungi - 230; Plants - 171; Viruses - 0; Other Eukaryotes - 4461 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR