K33035

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33035

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33035

Determination of introduced cDNA(s)

  • J033117C04 - Rice Full-length cDNAs - Original: J033117C04

    full reading [+] show sequence

    Nucleotide sequence: J033117C04 - full reading 
    CAACTTTGGC ACTAATGTTC CTTACGTGCT AGTGTGTGTG TATATATATA 
    TATATATATA TATTTGAAAG GAGTAAGTTT TTTCAGTCTA TTTATGAATG 
    AATTTTTGAA AAGGACCGAA ATGTAAAAAT CCAGCCAAAA TCATTGTGCG 
    GCCCTGGTGC TCGGCGTCGA CTCCCGTCTC GTCTCCTCGC GAGCTCGCCC 
    ACCCGCCGCC CTGCGCCGAT CTCCATCGAT TCCGCGACTT CGCGAGCAGT 
    GGCGCCGTCG TCCGTCCTGC TGCTTCCGCC GCATCCTGGT TTGGGGGTTC 
    AACTGAACCC CCTATGTCCC TCGTTAGATC CGCCCCTGCC CGGCAATGGG 
    CAGCATGGAC ACGCCAAGAG GAACAAAATT TTTTCAATGC GCTGCGCCAA 
    GTAGGGAAGA ATTTTGAGAA GATTACGCTG CGTGTCCAGA GCAAAAGCAA 
    AGATCAGGTC AGACATTATT ACTATCGTCT TGTTCGACGC ATGAAGAAAC 
    TTCTCGGTCC TGAGTTCTCG CTCGATGCAA AAAATTCCAA GGACACCATT 
    GCTGCTATGC TCTGCTGGTG GTCTCTGCTT GAAAAATTTA GCTGCAGTGC 
    ATCAAAACTG CATCTGAAGC CTCGGAGATT CAAAACTTTC GTAGAAGCAT 
    TGGGAAATCA ACTACTAAAG GATAGAAATA AAACCAGAAA AAAGTGTCCA 
    CGTGGGGATG TGTGCCTGTC CTCTTCATCT TCGGCTGTCA ACAGGACTCC 
    TGGAAATGAA TCTTTCTCAG TAAAACTCTT GGCTGTGGAT GTCTCCAATG 
    GTAGCAAAGT AGGATCTTCT AAAGGGTCAT TTTTCAAAAA GGTCACAGAA 
    CCAAATTGCA GTAACAAGTC AGGTGCAACT AAAGGGGACC TCTCCGCCAC 
    AAGAACTGTG AAACAGAAAA GAAGAGTAGG TGGTGTTGTT GCATCTGCTG 
    CATATAAAAA ATGGGAGAGA GCTGCCATGG CTGGTGTTTC TTTGGTTGCT 
    GATGCAGCTG AAGAGCTTGA GCGCAACACA GTGAACGCTG ATGCAAGAAT 
    GTTATCTCCA TCATCAAGCA ATGCCTGCAC AGTTGATGGT CTTGGCACAA 
    ATCATATAAA GGAAGCAGAT CAACAAGCAC CTGCAAAGCT AAAGTTGCAG 
    CTATTTCCAA TAAATGAAGC TACACGAAAG GCATTAGAGA AGGATGAACA 
    TAATCCACAT CTGGAACTCA CATTAAGTGC TAGGAAAAAA ATATCATCAG 
    TACTAGAACA TTTGAACCGC AAGTGGGGCA ACTCAAACAT TGCATCTGGA 
    GAGCTTTTGC TTTTTCCATA TTGTGCTCAT CAAGAAGATT TAGCTACATA 
    TCAGAGGTGG ACCACAAAAG ATACTGTCGC AGTGGCTGAC GTTTTCCTTT 
    CTGTGAATAG CCCATCTGTT TTTCGATTAA GGTATGGTTG GTTTTCCCTT 
    GCTGAGCTTG AAGCAGGCGT AAGTGAAATA TCTTTGACTC ATTTTGAGAA 
    TTGCTTGATA CCTGAAGACA TCCATGCCAA ATCTCCCTTA GAGGCTTGTG 
    TGCAAAAGGA TGGTAATTCG CTGAGTAGTT GTGCTCCTGA GCAACACCCT 
    TGTGGTTCGA AAGATCAGTC AGCATTATTG TTTGCTATGC CATCTAGTAC 
    AGGCAAGAGT GCTCAGGTGC CAGAGCAGTG CATTGATGTT CTCCCCTCAC 
    AGTTTGGCAG GCAGAATCAA GACCAAGTTA CCACGAACCA AGTTTTTGAG 
    GTTGATCAAG GGATGGATTG TGCTGCAGTA TCTGAAGGAG AGTGGGCAGA 
    TACCCTTACT GATATCAGTG TTGGATACTT ACTGACAGAA GCTTCCAGAG 
    GTGCTAATAC TGATTGTCCA GGGACATCTG TTGTCAAAAA CACACTGTTG 
    CTTGAGAATC CCTGCAGCTA TGATTCATTT GATGCTGCTG TTGCTCTTCA 
    TGCTTCTCGT TATAAATCAG CAGAGCAGCC AGCCCTTGCA TCCCATTCAA 
    CCATCTGGGG TGCTGAAGAA ACCTGTGACG CATTCAGTTT TAACCTACCA 
    GCATCTAGGA AGCGAGAAGG TTCAAATAAT TCAGCTAGCA GCTCTCCCGA 
    TAGTGACAGT GATGTTCATC CTTCAAACTC AGAAGGGTTT CAATGTTTTC 
    TTCAGGACTT AGCTGGAGCG GCGGTTGCTC ATAATCCTTG TATTGACGAT 
    GCCAAAGATG TAGAGTCACT TTGTGCTGAA TCGCCACCTC GAAGTGACCA 
    CGATTCTGCT CCGAAGGATC AATCTCTAGC TGACTTATAC TGGCCTGATT 
    CACTTGGACC ATTGGACTTG GACATACCGT CCGCGACATA CCATGCTGAT 
    GACTTACTCC TAGGGGACAG CCAGAATAGT TGGAACCGCA TGATGGCGAA 
    TAGCCTGGAT GCATTTCGAA ACCTGTCGTT CTTCACGGCA GATAAGAATG 
    ACTCGATACC ATCCATCATG TAGAGCTCTG AATACTGGTG CTTCCTTCAT 
    GCGCTTGCGT GGTGAAATTG CTACGTTGGC TACGAAGGTT TACCGCCAAC 
    GATGCTGTGC ATCTCGCTGA AGAGGCTTTA TATTGTCCAA GTGAGCTGTT 
    TGTGGCTAGA TCCAACAGCT GCGGACTTGC TGTGCGTTTG CAGTCAAGAG 
    GGACGCATGT TGTTGTAAAG TAGTAACATA AGAGCTGTTC GTGCTAACAT 
    GTATGTCGTG TAAATTGTGG TGTTCCTGTA AAAAAAAAAA GCTCACACAA 
    TCGCTTGGTT ACAATAAAGC TTCTCCTGCC GTGTACCAGA TC

    Gene models with high sequence identity

    1. AT2G36960.3 [+] show detail - TSL-kinase interacting protein 1
      E-value: 1e-135; Score: 481.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.1e-08
    ProfileScan SANT, eukarya 13.155
    HMMPfam Myb, DNA-binding 4.5e-06
    HMMSmart SANT, DNA-binding 5.2e-07

    See the detailed result >

    AT2G36960.3

    Model type
    Protein coding
    Short Description
    TSL-kinase interacting protein 1
    Curator Summary
    Arabidopsis thaliana myb/SANT domain protein
    Computational Description
    TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1).
    Link
    InterPro Scan - TAIR