K33043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33043

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33043

Determination of introduced cDNA(s)

  • J033035B15 - Rice Full-length cDNAs - Original: J033035B15

    full reading [+] show sequence

    Nucleotide sequence: J033035B15 - full reading
    GGAGGAAGAG GAGGACGGAC GCTGCATGTC ACCGTGCCAG GCCATGTGCC 
    GCGGCCCAAC ATGGCACGTT CTCCCCTCCA GTTCACTTCT CTCTCTGCTC
    ACACACACTA GCCTAGCCAG TGTACTAGTG TTGTAGTGTA CCCACCTCGC
    TTATAAATAC CCGGTTCCGC ACTACGGCCA CACAAACCAA CACCCCCACT
    CATCTCACTT CACTCTCTTT CTCTTCTCTT CACTTCACCA CCGCCACCTC
    TCTCATCGGA TCCCTGCAGA GGAGGAGAGG GCAGTGGCGG CGAAAGGCGA
    CATGGGCTCG CTGTCCTCTC TCGCCGCCGC GGCGGTGTTT CTCTCCCTCC
    TCGCCGTCGG CCACTGCGCC GCCGCCGACT TCAACGCCAC CGACGCCGAC
    GCCGACTTCG CCGGCAACGG CGTGGACTTC AACTCCAGCG ACGCCGCCGT
    CTACTGGGGC CCCTGGACCA AGGCCAGGGC CACCTGGTAC GGCCAGCCCA
    ACGGCGCCGG CCCCGACGAC AACGGCGGCG CGTGCGGGTT CAAGCACACC
    AACCAGTACC CGTTCATGTC GATGACCTCC TGCGGCAACC AGCCATTGTT
    CAAGGACGGC AAGGGATGCG GCTCTTGCTA CAAGATCAGA TGCACCAAGG
    ACCAGTCGTG CTCCGGCAGG TCGGAGACGG TGATCATCAC CGACATGAAC
    TACTACCCGG TGGCTCCGTT CCACTTCGAC CTCAGCGGCA CGGCGTTCGG
    CAGGCTCGCC AAGCCTGGCC TCAACGACAA GCTGCGCCAC TCCGGCATCA
    TCGACATCGA GTTCACCAGG GTGCCATGCG AGTTCCCGGG GCTCAAGATC
    GGGTTCCACG TGGAGGAGTA CTCGAACCCT GTGTACTTCG CGGTGCTGGT
    GGAGTACGAG GACGGCGACG GCGACGTGGT GCAGGTGGAC CTGATGGAGT
    CGAAGACGGC GCACGGGCCG CCGACGGGGA GGTGGACGCC GATGAGGGAG
    TCGTGGGGCT CCATCTGGAG GCTGGACACC AACCACAGGC TCCAGGCCCC
    CTTCTCCATC CGCATCCGCA ACGAGTCCGG CAAGACGCTC GTCGCCAACA
    ACGTCATCCC GGCCAACTGG AGGCCCAACA CATTCTACCG CTCCTTCGTC
    CAGTACAGCT GAACCGCCGC TCGCCGGCGG CGACCCTCGG CGCCGGCATC
    GCCGCCGCTG CTGCTGCTAG TAATACTACT ACTGCTATGA TGTAATTGTG
    TTACCGGTTG GGTTCTTTGA GTTTGTTGGG GTTGGGGATT GTGTGGTCGG
    TCTGTGTTGC GATTTGCAGA AACCGGGCGA GCGAAAGAAG AAAAAAAAAG
    CTGTGTGGGA AATGGAGGAG GTAGGCGTAC AAGGTTACGC TCTCCCGCCC
    ACTCTCGCTT TTATAATTTA TCATTTTCAA ATGGTGATGA TAAGATGATT
    AATCAAAAGG ATTATATTGC TACCT

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 4e-54; Score: 209.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart no description 0.000046
    Gene3D Pollen allergen, N-terminal 9.6e-47
    Gene3D Pollen allergen/expansin, C-terminal 2.4e-31
    superfamily Barwin-related endoglucanase 7.5e-45
    superfamily Pollen allergen/expansin, C-terminal 1.5e-31
    HMMPfam Pollen allergen/expansin, C-terminal 2.8e-30
    HMMPfam Rare lipoprotein A 7.1e-20
    ProfileScan Expansin 45, endoglucanase-like 26.946
    ProfileScan Pollen allergen/expansin, C-terminal 25.612
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR