K33049

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33049

Determination of introduced cDNA(s)

J023132D01 - Rice Full-length cDNAs - Original: J023132D01

full reading [+] show sequence

GACCTTTCCC AAAATTAGCA CCCGCCTCCC TCCGCCAATC CCCACCACCG 
CCACCGACCT CAAGCCAAAT CCACCGCCGC CTCCTCCTCC TCCGCCTCGC 
TTCCCCCCCT TCCCCCTTCC CTTCCCTTCC TCGGCGTCCC CTCCGCACCG 
GCTTGTGGGG GAGGAGTAGG AGGAGGAGAT GGCCGCAGCG GCTGTCGCGT 
GCAGGCGCGG GCTGCTCCTG CAGCAGCTGC AGCAGCAGCT GTGGCAGGCG 
CACCGGTGGG TTGGCCCCGC GCGGAGCATC TCGCAGCTCG TCAAGACCAA 
CGGCCGCCGC GCCTTCCTCG TCGACACCCT CGCCCTGGTG AGGAAGCTGG 
AGTCGCAGGG CGTGCCCACG AAGCAGGCGG AGGCGATCAC CTCCGCGATC 
ACGGAGGTCC TCAACGACAG CCTCGAGAGC ATCTCCGAGT CCTTCGTCTC 
CAAGGCCGAG ATGCAGAAGG CTGAGATGCT GCAGGAGTCC AATATCTCCA 
AGTTCAAGTC GCAAGTGCAG AGCTCGCAGG AAAACCATTT CTCTTTGTTG 
CAGCGTGAGA CTGAGAAACT CCGTGGAGAT ATTGATAAGA TGAGGAGTGA 
ACTGAAGTAT GAGATTGACA AGGTCACTGC AGGTCAGCGG CTGGATCTAA 
ACCTCGAAAG AGGGCGCATC CGTGATGAAC TCGCCAAGCA GAATGAGGAA 
ACTACAGAAC TCACCACAAA GCTAGACAAG GAAATTCACT CACTGAAAGC 
CCAGCTCGAG GCAGCAAAGT ATGATGTCAT CAAGTACTGC ATAGGTACCA 
TTGTTTCGAT ATCAGCTGTT GGACTCGCCG TGCTCCGCAT TGTGATGTGA 
AGCACAGATA CGTTCTTTCC TTTACCCATT CATCCATGGA AACTGCAAGA 
AAGAGGATAG GTTGTGATTC TGTTCCTAGT TTTTTTGGAG GGGACAAAAC 
GTGGTCAGGG GAAATGTTGT ACCATCATCC TATTAGGGAG GAGAAAAGAG 
GTGGTTCCTC AAAACTTGTA AAAATAGATC GACCCGCAGG AGAAATGCAG 
CAACCAAAAA TGATTCTTTT ACCTTTGTGT TTGTTGGAGC TTCTGATATT 
TGGTCAGC

Gene models with high sequence identity

AT2G16460.1 [+] show detail - Protein of unknown function (DUF1640)
E-value: 1e-79; Score: 293.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	DUF1640	4e-72
HMMPanther	Protein of unknown function DUF1640	3e-74
HMMPanther	UNCHARACTERIZED	3e-74

See the detailed result >

AT2G16460.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1640)
Computational Description: Protein of unknown function (DUF1640); FUNCTIONS IN: metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT3G51090.1); Has 484 Blast hits to 482 proteins in 154 species: Archae - 0; Bacteria - 7; Metazoa - 175; Fungi - 188; Plants - 83; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link: InterPro Scan - TAIR