K33050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33050

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33050

Determination of introduced cDNA(s)

  • J013000L17 - Rice Full-length cDNAs - Original: J013000L17

    full reading [+] show sequence

    Nucleotide sequence: J013000L17 - full reading 
    GAGGATCCCG TCACCTCCAA AAGCCCAAAA AGCTCCCGAA ACGCCAGGAA 
    AGCGGAAGGT CTCGTTCTCC TCCTCTCCCC AAAACCAAAT CCCCCTCTCC 
    GAAAATCTCC AAAAATCCAG CGAAAACCAT CCGATCCATC GATCGATCGA 
    TCGCCGCAAG ACTGCTTCGG GTTTTTTTTG CTCTTGCTCC GATCGACTGC 
    GTGCGCCTCG AATCGAAATC TCGAGTGATA TCACGCGGGA GTTGATCCAG 
    ACTTAAACCG GATTGCCTGA GAAGTTGATG GGATCGCGCG AATTCTCGGC 
    GCTGACGTGA GATCGTGAAA GGGTTGGACA TCAAATTGCT AGGAGGTTGC 
    GGCGATTTGG CTGCACGACT GCATGAACTG TTTCGTGAAC CTGGGACTCA 
    ACTCGAACTC GAACCACTAC GTGGCCTGCC TCATCATCTT CCTGCTGCAT 
    TTCTCCCCGC AGTTTCTGTT AAATCCATCC AATTGTAATT CGAATTCGAG 
    TAGTAATCGT GAAGGAGAGA AACAGAACCC CAACAATGGC GAACAACAGT 
    TCATATGGTG AAAATGTTAG GAGAAAGTCC CACACACCTT CTGCTATTGT 
    TATCGGCAGT GGGTTTGCAG GCATTGCTGC AGCCAACGCT CTCAGGAATG 
    CATCATTTGA GGTTGTTCTT CTAGAATCTC GTGACAGGAT AGGTGGTAGA 
    ATTCACACTG ATTACTCTTT TGGCTTTCCT GTTGATCTGG GAGCATCCTG 
    GCTTCATGGT GTTTGTGAGG AAAATCCCCT GGCACCAATT ATTGGAAGGC 
    TTGGACTTCC ACTGTATCGC ACAAGTGGAG ATGGCTCTGT GCTGTTTGAT 
    CATGACCTTG AGAGTTATGC TCTCTATGAC ACTAAGGGCC ATCAAGTTCC 
    CCAAGAGCTG GTAGAAAAGA TAGGGAAGGT TTTTGAGACT ATATTGGAAG 
    AGACTGGCAA ACTGAGGGAA GAAACTAAGG AAGACATTTC TATTGCGAAG 
    GCCATTGCAA TTGTTATGGA GAGAAATCCA CACTTGAGGC AAGAAGGGAT 
    TGCTCATGAT GTTCTTCAGT GGTATTTGTG CCGCATGGAA GGTTGGTTTG 
    CTACTGATGC GGACGCAATC TCTCTTCAGG GTTGGGACCA GGAGGTACTG 
    CTTCCTGGTG GCCATGGTCT CATGGTTCGT GGATATCGTC CAGTAATAAA 
    TACTCTGGCA AAAGGCCTAG ATATACGCCT TGGCCACAGG GTTGTTGAGA 
    TTGTTCGCCA CAGGAATAGG GTGGAGGTTA CTGTAAGCAG TGGTAAAACA 
    TTTGTTGCGG ATGCTGCAGT CATTGCTGTC CCCTTAGGTG TTCTTAAAGC 
    AAACACCATT AAATTTGAAC CTAGGCTGCC AGAGTGGAAG GAGGAAGCAA 
    TAAGAGAACT CTCAGTTGGA GTCGAGAACA AAATAATTCT CCACTTCAGC 
    GAGGTTTTCT GGCCTAATGT GGAGTTCCTT GGAGTAGTTT CATCCACCAC 
    ATATGGCTGC AGCTATTTCC TCAACCTCCA CAAGGCTACT GGCCATCCTG 
    TTCTAGTTTA CATGCCTGCG GGTCGGCTTG CATGTGACAT TGAAAAGCTG 
    TCAGATGAGG CTGCTGCCCA ATTTGCCTTC TCTCAGCTGA AGAAGATCCT 
    GCCCAACGCT GCCGAGCCGA TACATTACCT AGTGTCACAT TGGGGCTCAG 
    ACGAGAATAC ACTTGGATCC TACACCTTCG ATGGGGTGGG CAAACCTCGT 
    GACCTGTATG AGAAGCTGCG GATCCCAGTC GATAACCTAT TCTTTGCTGG 
    AGAAGCCACC AGTGTCCAGT ACACTGGCAC GGTGCATGGC GCCTTCTCCA 
    CTGGTCTGAT GGCAGCTGAG GAGTGCCGAA TGAGGGTTCT TGAGCGGTTC 
    AGGGAGCTGG ACATGCTGGA GATGTGCCAC CCTGCAATGG GGGAGCAGAC 
    CGCCACTGTC TCAGTCCCAC TGCTCATCTC CCGGCTGTGA ACAGACCAGG 
    AGCTGCACAA AAATTATAGT CTTCTAAGGC CATTTGGCAC TTGGCACCCG 
    GCGAGCGCAC TAAGCCATTC CCCTGATTGC TCGAGGAAGG CAGCATTGGA 
    GCAATTATCT TATTTGCTTC TCCTTGGCAT GAGGAGTGTG CTGGTGCAGC 
    TTGCGGTGCG CTAAATAAAG TCACTGTGAA AATGGAGTGT GGGAGTCTGG 
    TGTGTATTGT TGAGTATAAA ATGAGGGAGT CAATATGTAG TTAAGCAGGG 
    ATTACGGACA ATGTGAGCCA TCATTACTGA ACAAGATGGT GTATGTGTGA 
    CGAACAATTA ATTTAAACGA TCGATATTG

    Gene models with high sequence identity

    1. AT2G43020.1 [+] show detail - polyamine oxidase 2
      E-value: 0; Score: 689.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.6e-57
    HMMPfam Amine oxidase 2.4e-90
    superfamily FAD/NAD(P)-binding domain 4e-48
    superfamily FAD-linked reductases, C-terminal domain 3e-26
    FPrintScan Flavin-containing amine oxidase 6.4e-10
    FPrintScan Flavin-containing amine oxidase 6.4e-10
    FPrintScan Flavin-containing amine oxidase 6.4e-10
    FPrintScan Flavin-containing amine oxidase 6.4e-10
    HMMPanther AMINE OXIDASE 0
    HMMPanther AMINE OXIDASE 0

    See the detailed result >

    AT2G43020.1

    Model type
    Protein coding
    Short Description
    polyamine oxidase 2
    Computational Description
    polyamine oxidase 2 (PAO2); FUNCTIONS IN: primary amine oxidase activity, oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: polyamine oxidase 3 (TAIR:AT3G59050.1); Has 6381 Blast hits to 5960 proteins in 1057 species: Archae - 96; Bacteria - 2371; Metazoa - 1412; Fungi - 575; Plants - 752; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR