K33105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33105

Determination of introduced cDNA(s)

  • J023111I07 - Rice Full-length cDNAs - Original: J023111I07

    full reading [+] show sequence

    Nucleotide sequence: J023111I07 - full reading 
    CCCCCCGCAA TCCATCCCCA ACGCCATGGC CTCCACGCTC GCCTGGAGCT 
    CCGCCGCCTC CTCCTCCGCC CCCTCCTCCC GCCTCCCGCC GCGCCGCTCC 
    CCGTCGCTGG TCGTCGTCGC CCAGGGCAAG GTCAAGAAGT ATCGCCAGGT 
    CATACTGACA GATGACATAG CAGAGGTGGG GAAGAAAGGG GACACGCTTA 
    AAGTGAGGGC CGGGTTCTAC CGCAACTTCC TTCTGCCAAA GGGCAAGGCA 
    ACGCTGCTCA CCCCAGAAGT ACTCAAGGAA ATGCAAGTAG AACAGGAGAG 
    GATAGATGCT GAAAAGAAGC GGGTAAAAGA AGAGGCACAG CAACTTGCCC 
    GTGTTTTTGA AACTATTGGG GCATTCAAAG TGCCACGTAA AGGTGGGAAA 
    GGAAAACAGA TATTTGGGAG CGTCACAGCA CAAGATCTTG TTGACATCAT 
    AAAGTCACAA CTTAATAGGG ATGTCGACAA GCGTCTCGTG ACAGTGCCAG 
    AAATTCGTGA AATTGGGGAA TACATTGCAG AGATTAAGCT TCACCCTGAA 
    GTCACAGCTC AAGTAAGGCT GACCGTATAT GCGAAATAAG CCCTGAAGCT 
    GCTTGATTGA ATCTTTAGTG GATGGTGGGC TTTGGATGAA TTCTGATTTC 
    ACCAGAGATT TTTGCTGAAA CTCCAAGGTG CAGTGTCACA TCACGGGGCT 
    TGGTCTTTAC ACATTGCCAC TGTCCATCCT ACCTGTAAAG TCAGTTTCTT 
    GCACCTTTTT TTTTTTGACA AATTTATTTG TGTTAATGTT ATGGGGTTAA 
    ATGGGCATGA TGTAAACAAC AAAGGGTTCA GAGTCTAGAG CAACTGATAC 
    TTGTCTTGTA ATCTTGTTTA AAGGTGCACG TTCTTTATAG TC

    Gene models with high sequence identity

    1. AT3G44890.1 [+] show detail - ribosomal protein L9
      E-value: 6e-59; Score: 224.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L9, N-terminal 0
    HMMTigr Ribosomal protein L9, bacteria/chloroplast 3.4e-31
    HAMAP Ribosomal protein L9, bacteria/chloroplast 21.849
    HMMPanther 50S RIBOSOMAL PROTEIN L9 1.7e-57
    HMMPanther Ribosomal protein L9 1.7e-57
    Gene3D Ribosomal protein L9, N-terminal 0.0000000000007
    Gene3D Ribosomal protein L9, C-terminal 1.5e-16
    Coil coiled-coil 0
    HMMPfam Ribosomal protein L9, C-terminal 5.1e-22
    HMMPfam Ribosomal protein L9, N-terminal 2.5e-18
    superfamily Ribosomal protein L9, C-terminal 1.8e-22
    superfamily Ribosomal protein L9/RNase H1, N-terminal 0.000000000000039

    See the detailed result >

    AT3G44890.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L9
    Curator Summary
    Plastid ribosomal protein CL9
    Computational Description
    ribosomal protein L9 (RPL9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9, bacteria/chloroplast (InterPro:IPR020594), Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Ribosomal protein L9, N-terminal (InterPro:IPR020070), Ribosomal protein L9, C-terminal (InterPro:IPR020069); Has 7269 Blast hits to 7269 proteins in 2533 species: Archae - 0; Bacteria - 5393; Metazoa - 2; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 1796 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR