K33106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K33106

Determination of introduced cDNA(s)

  • J033034A12 - Rice Full-length cDNAs - Original: J033034A12

    full reading [+] show sequence

    Nucleotide sequence: J033034A12 - full reading 
    GACAGACCAT CTGCTTGCAT CTTCCCAATC TTTGCAAAGC AACAACAATC 
    CTAGCAAGTT AAGCTAAGCA CCCAGTTAGC TAAGCTAGCT ATAGCAGCCA 
    TGAATTCCAA GTTCCAGCTG ATATTGTCAA CCTTCGTTGT CATTGCCGCT 
    TTCACCCTGC TTCCACGTCC TTGCGCTTCC ATCGAGTTCT ACCGCAAGCT 
    CTCAAGCTGG TCCAATGGCG GAGCTACGTG GTATGGTGCT GCTAATGGCG 
    CTGGAAGTGA TGGTGGGGCA TGTGGGTACC AGGCTGCCGT CGACCAGGCA 
    CCGTTCTCGT CCATGATCGC CGCCGGCAGC CCTTCCATCT ACAAGTCCGG 
    CCTGGGCTGC GGCTCTTGCT ACCAGGTGAA ATGCAGTGGA AATAGCGCTT 
    GCTCGGGCAA CCCGGTGACT GTGGTCCTCA CCGACGAGTG CCCCGGGGGC 
    CCGTGCCTCA GCGAGCCGGT CCACTTCGAC CTGAGCGGGA CGGCGTTCGG 
    TGCCATGGCG AATCCTGGCC AGGCCGACCA GCTGCGCGCC GCCGGCGTCC 
    TCCAAATCCA GTACAACCGG GTGCCGTGCA ACTGGGGCGG AGTGATGCTC 
    ACCTTCGCCG TGGACGCCGG CTCGAACCCC AGCTACTTCG CGGTGCTCGT 
    CAAGTACGAG AACGGGGACG GCGACCTCTC CGGGATGGAC CTCATGCAGA 
    CAGGGGCCGG CGCCGCCTGG ACGCCGATGC AGCAGTCGTG GGGCGCCGTC 
    TGGAAGCTGA GCGCCGGCGC GGCGCTGCAG GCGCCGCTCT CCATCCGCCT 
    CACGTCCAGC TCCGGCAAGA CGCTCGTCGC CAGCAACGTC ATCCCTTCCG 
    GCTGGAAGCC CGGCGCGTCG TACACATCGA CGGTGAACTA CTAATGATCG 
    CAAGCACTGC ACCACAACTT GCATAGCTGC ATGTGCATGT GCACCATGCA 
    TGCAGCTTTG CAATACATAT ATGTCTGCAG GCAAAAGGCA TATATATATT 
    GGATCGATTG GTGCAACAAC GATGTGTACT TGTAAGTGTG AAATTAATAA 
    CGGCGAGATA CGTACAGAGG AGGAGGCGCA GATGATTTAC CAGTTCTCCC 
    CTCATCGCTG CAGTTGTCGT ACGTGTCAAT GATTATCGTT ATACGTGTTA 
    ATTACTGTGT GTGTGATCAG TGTTTGTAAT GGCATAATAG CCGACCAGTG 
    CTTATAAACG TGCTACTATA TATGAAGTTA TGAACTCAAT TCACAATTTC

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 7e-72; Score: 268.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pollen allergen, N-terminal 1.6e-40
    Gene3D Pollen allergen/expansin, C-terminal 4e-28
    superfamily Barwin-related endoglucanase 4.8e-42
    superfamily Pollen allergen/expansin, C-terminal 3.2e-30
    ProfileScan Expansin 45, endoglucanase-like 31.016
    ProfileScan Pollen allergen/expansin, C-terminal 26.313
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Major pollen allergen Lol pI 1.7e-26
    FPrintScan Expansin/Lol pI 3.7e-26
    FPrintScan Expansin/Lol pI 3.7e-26
    FPrintScan Expansin/Lol pI 3.7e-26
    FPrintScan Expansin/Lol pI 3.7e-26
    FPrintScan Expansin/Lol pI 3.7e-26
    FPrintScan Expansin/Lol pI 3.7e-26
    HMMPfam Pollen allergen/expansin, C-terminal 3.2e-30
    HMMPfam Rare lipoprotein A 7.4e-21
    HMMSmart no description 3.8e-07

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR