K33107

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33107

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33107

Determination of introduced cDNA(s)

  • J023019D09 - Rice Full-length cDNAs - Original: J023019D09

    full reading [+] show sequence

    Nucleotide sequence: J023019D09 - full reading 
    GTCTCCCCCT CGCCTCCGCG TCGCCGCCTT CAAAAATACT AATAAAAAAG 
    AAAAAAAACG CAAAAAGAAA AGGGAGGGTA GGAGAGAAAA AAAAAAAAAA 
    GAAAAAAACT TCCCGAATTC CCCATCCTCC TCCGCGCCGC CTCGCCGGAA 
    TTCGCCTCGA GGTCCGGCTA ATCGAAGCGG CGGTTGATTT CTAGGTCGGA 
    TCGGGGGGGC GTCGGGAGAA TGGACGAGTT CGAGCTGGAG GATAACCTAG 
    AGTTACTCCT CCAGAGCATC CAGGAGCTCA TCGAGGACCA GGGGGAGAAC 
    AACCCCTTCG GCGCGGCCAA CCACGACGAG CTCATCGCTA GCCTCCTCCA 
    CAACAACCAG GAGAATCCGC TGACTGATGT GTCCGTGGAG GACGTTAGGG 
    ATGGGAAGGA CATGCAGGGG ATCCCCTGGG AGAAGATTGT GTTCCGGAGG 
    GATCAGTATC GGGAGATGAA GATGAAGAAT TACAGGAATT ATCAGAACCT 
    GAGTTATGCC CGGGAGGAAG CTCTGAAGGA CTGCAAGAAA GTTGAAAAGG 
    ATAGTCCTTA CTACGATTTC CAGTACAATA CAAGGCGTGC TCGCCCATCA 
    ATTGTACATT TTCAGTTAAG GAATCTGGTC TGGGCAACAA CCAAGCATGA 
    TGTTTACACG GTGCACAACC AATCAGTGAC ACATTGGTCA TCATTGGACC 
    AGACAAGTAC TGAGCTAATC AATGCGGATG ACTGCATTAT ACCAAAACAG 
    AGAGGGCATG GTTCACAGTC CGTTGCAATG GTCCAGGTCA CAACTATGGC 
    TGTAGATGAT AGTTTATTGG TAATTGGTGG TTTTCAGGGG GAGCTTATAT 
    GCAAGCGCCT GGAAGATGAT GGAGTTCTTT TCAGCACAAG AGTTACAGAT 
    GATGAGAATG CTATTACCAA CTCTTTGGAG ATATATCAGG ATCCCACTGG 
    ATCTAGACGG TTGGTGGCTG CTAACAATGA CTGCTCTGTC AGAATTTTTG 
    ACATTGAGTA CTTTGATTTG CTGAAGCACT ATGTCTTCCC ATGGTCTGTG 
    AATAGCGTTT CGGTGAGCCC AAAAGGGGGA CTGTTTGCTG TCCTTGGGGA 
    CCATGAGGAT GGCTTGGTAG TGGATCCCAA GTGTGGCAAG GCAATCGGTG 
    CACTTAAGGG TCACTTGGAT TACTCTTTCG CATCTGCCTG GCATCCTGAT 
    GGCAATATCT TGGCTACCGG CAGTCAAGAT ACAACCTGTC GGCTGTGGGA 
    CATTAGAAAC CTATCAGAGT CTGTGGCTGT ACTTGGCGGA AGGATGGGCT 
    CGATACGTTG CATCAAGTTC TCTTCAGACG GGCGGTTCTT GGCTACTGCA 
    GAACCTGTGG ATTTCGTCCA TATCTACGAT TCATATGCAG ACTATGGCAG 
    ATCTCACGAG ATTGACTTGT TTGGAGAGAT TGCTGGATTG TCATTCAGCC 
    CAGACGCCGA GGCCTTGTAC GTTGGCATAG CAGATCCAAC ATACGGTGGC 
    CTCATAGAGT TCAACAGGAG GCACCAACAT CATTATTTGA ACTGCATGTG 
    GTGATGCCAT TTGTTAAGCG AAATGTGCGT CTTTGCTGAG CTTAGCAGTC 
    CTCCGATTAT GTGCTGCATA ACTTGCACAA CTTGTGGAAG GCGCACTAAT 
    AGTGAAAAGC TCATTAAAGA AATTTTGCTG CTTTAGTTTT TAGCTGCAGC 
    ACCTGAAGCT CATGAATGGC CCCGAACTGT AAAATTCTGT CCCTTTTGTC 
    TAAAATGTCA CTTAGGAACT GATAGAGGTA GATATATATG TATAGCCGTC 
    CTATTTCATT TTTCTCCAAA TCGATGTACA TATAGTTGTG GTATCCCGGT 
    TCTTTGCAAC GCAACGAGCA TTGGCAACAA AATAGCAAGG ATAAATTATG 
    CCAGAAGTGG ATGGTTCGGC ACATCCGGAA GAAGATTTTA GCTCAATGAT 
    CATATGTGTT CCACTCGGTT GTTCGGCTCT CGTTTATACA AGAACAGGGA 
    ATTTCCCAGC AGCGACCTTT TCAGTCCTTG GGACACGTAG AAATTGCTAG 
    TCGGTGGCTC GGAGCCGTTC TCTCTTTATC AAACCGAACA TGCTTGGAAT 
    TCTCTATTAT CATAATTTTG CAATATCCAT TTATAGATAT TGAAATCAAA 
    GTACGTTACA TCC

    Gene models with high sequence identity

    1. AT1G78070.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-135; Score: 481.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 1.4e-33
    ProfileScan WD40 repeat 2 14.485
    ProfileScan WD40-repeat-containing domain 15.557
    PatternScan WD40 repeat, conserved site 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther KATANIN P80 SUBUNIT 3.6e-12
    Gene3D WD40/YVTN repeat-like-containing domain 1.6e-28
    HMMSmart WD40 repeat 150
    HMMSmart WD40 repeat 3e-07
    HMMSmart WD40 repeat 0.7
    HMMPfam WD40 repeat, subgroup 2.5e-08
    HMMPfam WD40 repeat, subgroup 0.002

    See the detailed result >

    AT1G78070.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G36070.1); Has 25796 Blast hits to 12397 proteins in 585 species: Archae - 64; Bacteria - 7254; Metazoa - 7661; Fungi - 5235; Plants - 2447; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR