K33120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33120

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33120

Determination of introduced cDNA(s)

  • J013135G08 - Rice Full-length cDNAs - Original: J013135G08

    full reading [+] show sequence

    Nucleotide sequence: J013135G08 - full reading
    GACTAGTTGC GTGCGTCGTC TCCTCTCCTT TCGCTGACCT CTTCCTCTGG 
    ACTATGGCCG TGTCCAGAAA AACTAGTTTC GTTGCTGTTC TAGATTCTTC
    TTCCTGCTTG CCTCTTCTTG ATATTTGCCC TGGTCTAGCT GTCTTGGCCT
    TATAGCAGAC AGAGCTGTAT TCTCTGGTGA TTGAACAGAG GATTGGAGGT
    TGTTCTTGGT TCTTGGAGGA GAATCATCTC CCTTGGCAGC TCTCTACAAG
    CAGGAGGAAG AAGACGACAC GGCAGTACAG AGGATCAATG GAGGAAGAAC
    CGAGTGCAAC GTGTAGGTAC TTTTGCCACA TGTGCTCGCT GATCGTGAGG
    CCGGAGATGG GCATCGAGGA GGTGAAGTGC CCCCACTGCC ACTCCGGCTT
    CGTGGAAGAG ATGGTCGGCG GCGACGACGA CGATGGACGG CGAAGCGGCA
    ACGCCGCCGC CGGAGGCCGC GGCGCTGCCA GTGAGGAGAA CGCCGACGAC
    GAGGCGACGC CCGCTCCGCC TCCTTGGGCG CCTATGCTCA TAGACCTCCT
    CGGCGTCTCG TCCCGACGCC ACGGCCTCGA TGATGGCAGC AGCGACCTCG
    CCGCCTTCGC GCGGAGGCAG TACCGCAACA TCGCCTTCCT GCAGCTGCTC
    AGCGCGCTCC AGGACGACGA CGAAGCCGGC GGCGACACGC CCGGCGACTC
    GGGGCGCGAG CGGCTCGTTC TGGTTACCCC CGCGGACGGC AATGGCGCCG
    CCGCGACGTC CGGCTTCACG CTCGGCGACC TGTTCCTCGG CCCCGGGCTG
    GACCTGCTGC TGGACTACCT GGCCGACACC GACCCGAACC GTCAGGGCAC
    GCCGCCGGCC AGGAAGGAGG CCGTGGCCGC GCTGCCGACG GTCCGGGTAC
    ACGACGCGGC CGGCGCGACG TGCCCGGTGT GCCTGGACGA GTTCGAGGCC
    GGCGGCGAGG CGAGGGAGAT GCCGTGCAAG CACAGGTTCC ACGACGGCTG
    CATCCTGCCG TGGCTGGAGG CGCACAGCTC CTGCCCCGTG TGCAGGTACC
    AGCTGCCCAC GGACGACGAG CCCACCGCCG GCAACGTCGT CGTTGCAGCC
    GAGGGCGGCG ACGAGCTCAT TGGCAATGCA CGCGGCGGCG GCGGCGATGG
    TGATGGCGAC GGAGGAAGCA GTGGCAGGAG GCGCTGGCTC TCGTGGCCTT
    TTGGCGGGTT ATTCTCGCAC AGATCGAGCA GGAGGTCCTC CTCGTCGTGA
    CGGCAAAATG CAGCAAACAA TGTGATTAGT TCAGTTGTCT AGTTGAGTAG
    TTGTATGTCC CTGCATCAGT GCATTCTTGT ATAGTTGGAT AGCTGCATTT
    GTTCTTTGGT CG

    Gene models with high sequence identity

    1. AT1G55530.1 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-37; Score: 153.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING ZINC FINGER PROTEIN 9.3e-34
    HMMSmart Zinc finger, RING-type 0.000000015
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000015
    ProfileScan Zinc finger, RING-type 12.637
    Gene3D no description 0.0000000000002
    superfamily RING/U-box 0.0000000000000014

    See the detailed result >

    AT1G55530.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR