K33120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) dark green (PATO:0001249) (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33120

Determination of introduced cDNA(s)

J013135G08 - Rice Full-length cDNAs - Original: J013135G08

full reading [+] show sequence

GACTAGTTGC GTGCGTCGTC TCCTCTCCTT TCGCTGACCT CTTCCTCTGG 
ACTATGGCCG TGTCCAGAAA AACTAGTTTC GTTGCTGTTC TAGATTCTTC 
TTCCTGCTTG CCTCTTCTTG ATATTTGCCC TGGTCTAGCT GTCTTGGCCT 
TATAGCAGAC AGAGCTGTAT TCTCTGGTGA TTGAACAGAG GATTGGAGGT 
TGTTCTTGGT TCTTGGAGGA GAATCATCTC CCTTGGCAGC TCTCTACAAG 
CAGGAGGAAG AAGACGACAC GGCAGTACAG AGGATCAATG GAGGAAGAAC 
CGAGTGCAAC GTGTAGGTAC TTTTGCCACA TGTGCTCGCT GATCGTGAGG 
CCGGAGATGG GCATCGAGGA GGTGAAGTGC CCCCACTGCC ACTCCGGCTT 
CGTGGAAGAG ATGGTCGGCG GCGACGACGA CGATGGACGG CGAAGCGGCA 
ACGCCGCCGC CGGAGGCCGC GGCGCTGCCA GTGAGGAGAA CGCCGACGAC 
GAGGCGACGC CCGCTCCGCC TCCTTGGGCG CCTATGCTCA TAGACCTCCT 
CGGCGTCTCG TCCCGACGCC ACGGCCTCGA TGATGGCAGC AGCGACCTCG 
CCGCCTTCGC GCGGAGGCAG TACCGCAACA TCGCCTTCCT GCAGCTGCTC 
AGCGCGCTCC AGGACGACGA CGAAGCCGGC GGCGACACGC CCGGCGACTC 
GGGGCGCGAG CGGCTCGTTC TGGTTACCCC CGCGGACGGC AATGGCGCCG 
CCGCGACGTC CGGCTTCACG CTCGGCGACC TGTTCCTCGG CCCCGGGCTG 
GACCTGCTGC TGGACTACCT GGCCGACACC GACCCGAACC GTCAGGGCAC 
GCCGCCGGCC AGGAAGGAGG CCGTGGCCGC GCTGCCGACG GTCCGGGTAC 
ACGACGCGGC CGGCGCGACG TGCCCGGTGT GCCTGGACGA GTTCGAGGCC 
GGCGGCGAGG CGAGGGAGAT GCCGTGCAAG CACAGGTTCC ACGACGGCTG 
CATCCTGCCG TGGCTGGAGG CGCACAGCTC CTGCCCCGTG TGCAGGTACC 
AGCTGCCCAC GGACGACGAG CCCACCGCCG GCAACGTCGT CGTTGCAGCC 
GAGGGCGGCG ACGAGCTCAT TGGCAATGCA CGCGGCGGCG GCGGCGATGG 
TGATGGCGAC GGAGGAAGCA GTGGCAGGAG GCGCTGGCTC TCGTGGCCTT 
TTGGCGGGTT ATTCTCGCAC AGATCGAGCA GGAGGTCCTC CTCGTCGTGA 
CGGCAAAATG CAGCAAACAA TGTGATTAGT TCAGTTGTCT AGTTGAGTAG 
TTGTATGTCC CTGCATCAGT GCATTCTTGT ATAGTTGGAT AGCTGCATTT 
GTTCTTTGGT CG

Gene models with high sequence identity

AT1G55530.1 [+] show detail - RING/U-box superfamily protein
E-value: 2e-37; Score: 153.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RING ZINC FINGER PROTEIN	9.3e-34
HMMSmart	Zinc finger, RING-type	1.5e-08
HMMPfam	Zinc finger, C3HC4 RING-type	1.5e-08
ProfileScan	Zinc finger, RING-type	12.637
Gene3D	no description	2e-13
superfamily	RING/U-box	1.4e-15

See the detailed result >

AT1G55530.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).
Link: InterPro Scan - TAIR