K33126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33126

Determination of introduced cDNA(s)

  • J033041K02 - Rice Full-length cDNAs - Original: J033041K02

    full reading [+] show sequence

    Nucleotide sequence: J033041K02 - full reading
    GGTTCTTGGA GCCTTGGAGG ACCAAAGCTA CGTGCGGACA AATCGTACGG 
    CAAGTCTACC CCGCTCTGGT TTCCTCCGTC GCATCGCAAA TTCGCAATAT
    CGCATCGACG CCTCGTCCCT CCTAGGCCTA GCTAGTCTAC TCCGACCAAG
    TTGTCGCCGA GAAGCGAGGA GCGCCGGCGA TGGAGGTGAA GTGCCGTCGG
    CTGGAGGGGA AGGTAGCCGT CGTGACGGCC TCCACGCAGG GCATCGGTCT
    CGCCATCGCC GAGCGCCTCG GCCTCGAGGG CGCCGCCGTC GTCATCTCCT
    CCCGCAAGAA GAAGAACGTC GACGAGGCGG TCGTGGGCCT CAGGGCGAAG
    GGGATCACCG TCGTCGGGGT GGTCTGCCAT GTCTCCATCC CGGAGCAGCG
    CAAGAACCTC ATCGACACGG CGGTCAAGAA TTTTGGGCAT ATCGACATAG
    TTGTCTCCAA TGCTGCTGCC AATCCTTCCG TAGATAACAT ATTAGAAATG
    AAAGAGCCTA TCCTTGACAA ACTATGGGAT ATTAATGTTA AGGCATCTAT
    TCTTCTTCTT CAGGATGCTG CTGCATATTT GCGGAAGGGA TCATCCGTGA
    TATTGATTTC TTCAATTACT GGCTATAATC CAGAACCAGC ATTGTCGATG
    TATGCTGTTA CAAAAACTGC CCTGCTTGGT CTCACAAAGG CTCTTGCTGC
    TGAGATGGGG CCAAATACTC GTGTTAACTG TATAGCCCCT GGTTTTGTTC
    CTACAAATTT TGCTCGTTTC CTCACAACTA ATGACACCAT TAAAAATGAG
    CTTATTGACA GGAGCACACT TAAGAGATTG GGTACTGTGG AAGACATGGC
    TGCAGCCGCA GCTTTCTTGG CATCAGACGA TGCATCATTC ATTACAGCTG
    AAACTATTGT TGTTGCTGGA GGAACTCGAT CTAGGCTGTA GATCTAAGCT
    GGGCTTGGCT ATGGTTTGAC AGGCTGGCGA CTTACAAAGT GCACTTCTTG
    CTGGTAAATA ACCTATAGTT CTTGCTATAG GCAATATAAT ACTATATGTA
    CAAGGACCGA TGTTAAACTG CTTAAATCGT GACCGGAACT TTTTTCGTTG
    CTTTGAAGTC ACCCATGTCA ATATGCC

    Gene models with high sequence identity

    1. AT4G05530.1 [+] show detail - indole-3-butyric acid response 1
      E-value: 3e-72; Score: 269.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Short-chain dehydrogenase/reductase, conserved site 0
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000011
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000011
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000011
    HMMPfam Short-chain dehydrogenase/reductase SDR 6.7e-27
    HMMPanther DEHYDROGENASE, SHORT CHAIN PROTEIN 13-RELATED 3.9e-122
    HMMPanther Short-chain dehydrogenase/reductase SDR 3.9e-122
    superfamily NAD(P)-binding domain 9e-68
    Gene3D NAD(P)-binding domain 1e-64

    See the detailed result >

    AT4G05530.1

    Model type
    Protein coding
    Short Description
    indole-3-butyric acid response 1
    Curator Summary
    Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.
    Computational Description
    indole-3-butyric acid response 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: root hair elongation, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR