K33126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33126

Determination of introduced cDNA(s)

  • J033041K02 - Rice Full-length cDNAs - Original: J033041K02

    full reading [+] show sequence

    Nucleotide sequence: J033041K02 - full reading 
    GGTTCTTGGA GCCTTGGAGG ACCAAAGCTA CGTGCGGACA AATCGTACGG 
    CAAGTCTACC CCGCTCTGGT TTCCTCCGTC GCATCGCAAA TTCGCAATAT 
    CGCATCGACG CCTCGTCCCT CCTAGGCCTA GCTAGTCTAC TCCGACCAAG 
    TTGTCGCCGA GAAGCGAGGA GCGCCGGCGA TGGAGGTGAA GTGCCGTCGG 
    CTGGAGGGGA AGGTAGCCGT CGTGACGGCC TCCACGCAGG GCATCGGTCT 
    CGCCATCGCC GAGCGCCTCG GCCTCGAGGG CGCCGCCGTC GTCATCTCCT 
    CCCGCAAGAA GAAGAACGTC GACGAGGCGG TCGTGGGCCT CAGGGCGAAG 
    GGGATCACCG TCGTCGGGGT GGTCTGCCAT GTCTCCATCC CGGAGCAGCG 
    CAAGAACCTC ATCGACACGG CGGTCAAGAA TTTTGGGCAT ATCGACATAG 
    TTGTCTCCAA TGCTGCTGCC AATCCTTCCG TAGATAACAT ATTAGAAATG 
    AAAGAGCCTA TCCTTGACAA ACTATGGGAT ATTAATGTTA AGGCATCTAT 
    TCTTCTTCTT CAGGATGCTG CTGCATATTT GCGGAAGGGA TCATCCGTGA 
    TATTGATTTC TTCAATTACT GGCTATAATC CAGAACCAGC ATTGTCGATG 
    TATGCTGTTA CAAAAACTGC CCTGCTTGGT CTCACAAAGG CTCTTGCTGC 
    TGAGATGGGG CCAAATACTC GTGTTAACTG TATAGCCCCT GGTTTTGTTC 
    CTACAAATTT TGCTCGTTTC CTCACAACTA ATGACACCAT TAAAAATGAG 
    CTTATTGACA GGAGCACACT TAAGAGATTG GGTACTGTGG AAGACATGGC 
    TGCAGCCGCA GCTTTCTTGG CATCAGACGA TGCATCATTC ATTACAGCTG 
    AAACTATTGT TGTTGCTGGA GGAACTCGAT CTAGGCTGTA GATCTAAGCT 
    GGGCTTGGCT ATGGTTTGAC AGGCTGGCGA CTTACAAAGT GCACTTCTTG 
    CTGGTAAATA ACCTATAGTT CTTGCTATAG GCAATATAAT ACTATATGTA 
    CAAGGACCGA TGTTAAACTG CTTAAATCGT GACCGGAACT TTTTTCGTTG 
    CTTTGAAGTC ACCCATGTCA ATATGCC

    Gene models with high sequence identity

    1. AT4G05530.1 [+] show detail - indole-3-butyric acid response 1
      E-value: 3e-72; Score: 269.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Short-chain dehydrogenase/reductase, conserved site 0
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Glucose/ribitol dehydrogenase 8.2e-35
    FPrintScan Short-chain dehydrogenase/reductase SDR 1.1e-06
    FPrintScan Short-chain dehydrogenase/reductase SDR 1.1e-06
    FPrintScan Short-chain dehydrogenase/reductase SDR 1.1e-06
    HMMPfam Short-chain dehydrogenase/reductase SDR 6.7e-27
    HMMPanther DEHYDROGENASE, SHORT CHAIN PROTEIN 13-RELATED 3.9e-122
    HMMPanther Short-chain dehydrogenase/reductase SDR 3.9e-122
    superfamily NAD(P)-binding domain 9e-68
    Gene3D NAD(P)-binding domain 1e-64

    See the detailed result >

    AT4G05530.1

    Model type
    Protein coding
    Short Description
    indole-3-butyric acid response 1
    Curator Summary
    Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.
    Computational Description
    indole-3-butyric acid response 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: root hair elongation, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR